View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20071_low_43 (Length: 339)

Name: NF20071_low_43
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20071_low_43
NF20071_low_43
[»] chr3 (16 HSPs)
chr3 (16-101)||(6511190-6511275)
chr3 (15-100)||(6823128-6823213)
chr3 (232-339)||(6510875-6510976)
chr3 (177-285)||(6511002-6511112)
chr3 (249-339)||(8473437-8473521)
chr3 (12-87)||(6510846-6510921)
chr3 (239-310)||(6584900-6584970)
chr3 (241-303)||(6822602-6822664)
chr3 (19-87)||(6749745-6749813)
chr3 (255-307)||(8592531-8592583)
chr3 (234-339)||(7588606-7588710)
chr3 (13-100)||(7588665-7588755)
chr3 (249-303)||(6823200-6823254)
chr3 (8-87)||(6418370-6418449)
chr3 (19-87)||(6471931-6471999)
chr3 (267-303)||(6552311-6552347)
[»] scaffold0445 (2 HSPs)
scaffold0445 (235-307)||(8644-8716)
scaffold0445 (11-87)||(8695-8771)
[»] scaffold2089 (2 HSPs)
scaffold2089 (247-339)||(968-1054)
scaffold2089 (11-62)||(964-1015)
[»] scaffold0425 (1 HSPs)
scaffold0425 (267-303)||(5281-5317)


Alignment Details
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 6511275 - 6511190
Alignment:
Q  16 gaagagagtacctgaaagtgtaagaacaaacaatcgtagatctttgtcggaaaaacacaaactgagatctgctaagtaatgagaga 101  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6511275 gaagagagtacctgaaagtgtaagaacaaataatcggagatctttgtcggaaaaacacaaactgagatctgctaagtaatgagaga 6511190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 6823213 - 6823128
Alignment:
Q  15 ggaagagagtacctgaaagtgtaagaacaaacaatcgtagatctttgtcggaaaaacacaaactgagatctgctaagtaatgagag 100  Q
    |||||||| ||||| ||| ||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6823213 ggaagagattacctaaaattgtgagaacaaacaatctgagatctttgtcggaaaaacacaaactgagatctgctaagtaatgagag 6823128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 232 - 339
Target Start/End: Complemental strand, 6510976 - 6510875
Alignment:
Q  232 aagtataactgggatggatcacgtaacataatttaaaagattaacttttgttaacaaaggaagagattacctgaaactgaaagtgtgagaagaaacaaac 331  Q
    |||||||||| |||||||||||||||||| |||||||||||||||| ||||||| |||| ||||||      | | ||||||||||||||||||||||||    
T  6510976 aagtataactaggatggatcacgtaacatgatttaaaagattaactgttgttaagaaagtaagaga------gtatctgaaagtgtgagaagaaacaaac 6510883  T
Q  332 tgagatct 339  Q
    ||||||||    
T  6510882 tgagatct 6510875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 285
Target Start/End: Complemental strand, 6511112 - 6511002
Alignment:
Q  177 tcattatcataattaacctaaatataagtataacaaggatggtcctta--aaaacaaaagtataactgggatggatcacgtaacataatttaaaagatta 274  Q
    ||||| ||||| ||||| |||||||||||||| |||||||||||||||  |||| ||||| ||||||  |||||||||||||||||| ||  ||  ||||    
T  6511112 tcattttcatatttaacttaaatataagtatagcaaggatggtccttaaaaaaaaaaaaggataactatgatggatcacgtaacatagttagaattatta 6511013  T
Q  275 acttttgttaa 285  Q
    |||||||||||    
T  6511012 acttttgttaa 6511002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 249 - 339
Target Start/End: Original strand, 8473437 - 8473521
Alignment:
Q  249 atcacgtaacataatttaaaagattaacttttgttaacaaaggaagagattacctgaaactgaaagtgtgagaagaaacaaactgagatct 339  Q
    ||||| ||||||||||| ||||||||||||||||||| ||| |||||||||||      |||||||||||| || ||||||||||||||||    
T  8473437 atcacataacataatttgaaagattaacttttgttaagaaatgaagagattac------ctgaaagtgtgaaaacaaacaaactgagatct 8473521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 6510921 - 6510846
Alignment:
Q  12 aaaggaagagagtacctgaaagtgtaagaacaaacaatcgtagatctttgtcggaaaaacacaaactgagatctgc 87  Q
    |||| ||||||||| |||||||||| |||| |||||| |  |||||||||||  ||||||||||||||||||||||    
T  6510921 aaagtaagagagtatctgaaagtgtgagaagaaacaaactgagatctttgtcacaaaaacacaaactgagatctgc 6510846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 6584970 - 6584900
Alignment:
Q  239 actgggatggatcacgtaacataatttaaaagattaacttttgttaacaaaggaagagattacctgaaactg 310  Q
    ||||||| ||||||||||||||||||| ||||| ||||| ||||||| ||| ||||||||||||| ||||||    
T  6584970 actgggacggatcacgtaacataatttgaaaga-taactattgttaataaatgaagagattacctaaaactg 6584900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 303
Target Start/End: Complemental strand, 6822664 - 6822602
Alignment:
Q  241 tgggatggatcacgtaacataatttaaaagattaacttttgttaacaaaggaagagattacct 303  Q
    |||||||||||| |||||||| ||| |||| |||||||||| |||| ||||||||||||||||    
T  6822664 tgggatggatcatgtaacatagtttgaaagcttaacttttgataacgaaggaagagattacct 6822602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 6749745 - 6749813
Alignment:
Q  19 gagagtacctgaaagtgtaagaacaaacaatcgtagatctttgtcggaaaaacacaaactgagatctgc 87  Q
    |||| ||||||||||||| |||||||||||    |||||||||||  |||||||||| |||||||||||    
T  6749745 gagattacctgaaagtgtgagaacaaacaaattgagatctttgtctcaaaaacacaagctgagatctgc 6749813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 8592531 - 8592583
Alignment:
Q  255 taacataatttaaaagattaacttttgttaacaaaggaagagattacctgaaa 307  Q
    ||||||||||| |||||||| ||||||| ||||||||||  ||||||||||||    
T  8592531 taacataatttgaaagattagcttttgtaaacaaaggaaaggattacctgaaa 8592583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 339
Target Start/End: Original strand, 7588606 - 7588710
Alignment:
Q  234 gtataactgggatggatcacgtaacata-----atttaaaagattaacttttgttaacaaaggaagagattacctgaaactgaaagtgtgagaagaaaca 328  Q
    |||||||| ||||||||||| |||||||     |||| |||||| |||||||  |||| ||||||||||||||      ||||||||||||||| |||||    
T  7588606 gtataacttggatggatcacataacatacagtaatttgaaagatgaacttttagtaaccaaggaagagattac------ctgaaagtgtgagaacaaaca 7588699  T
Q  329 aactgagatct 339  Q
    |||| ||||||    
T  7588700 aactaagatct 7588710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 7588665 - 7588755
Alignment:
Q  13 aaggaagagagtacctgaaagtgtaagaacaaacaatcgtagatctttgtcggaaa--aacac-aaactgagatctgctaagtaatgagag 100  Q
    |||||||||| ||||||||||||| ||||||||||| |  |||||||||||  |||  ||||| |||||||||||||| ||| || |||||    
T  7588665 aaggaagagattacctgaaagtgtgagaacaaacaaactaagatctttgtcaaaaaataacactaaactgagatctgccaaggaaagagag 7588755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 303
Target Start/End: Complemental strand, 6823254 - 6823200
Alignment:
Q  249 atcacgtaacataatttaaaagattaacttttgttaacaaaggaagagattacct 303  Q
    ||||| ||||||||||| ||| |||||||||  ||||||| ||||||||||||||    
T  6823254 atcacataacataatttgaaacattaactttgattaacaagggaagagattacct 6823200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 6418449 - 6418370
Alignment:
Q  8 tagcaaaggaagagagtacctgaaagtgtaagaacaaaca-atcgtagatctttgtcggaaaaacacaaactgagatctgc 87  Q
    ||||||||||| ||| ||||||||||||| |||||||||| || | ||||||||| | | ||| |||||||| ||||||||    
T  6418449 tagcaaaggaaaagattacctgaaagtgtgagaacaaacagattg-agatctttgacagtaaagcacaaacttagatctgc 6418370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 6471999 - 6471931
Alignment:
Q  19 gagagtacctgaaagtgtaagaacaaacaatcgtagatctttgtcggaaaaacacaaactgagatctgc 87  Q
    |||| ||||||||||||| |||||||||||    |||||||||||  || ||||||| |||||||||||    
T  6471999 gagattacctgaaagtgtgagaacaaacaaattgagatctttgtctcaagaacacaagctgagatctgc 6471931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Complemental strand, 6552347 - 6552311
Alignment:
Q  267 aaagattaacttttgttaacaaaggaagagattacct 303  Q
    |||||||||||||||||||||||  ||||||||||||    
T  6552347 aaagattaacttttgttaacaaataaagagattacct 6552311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 8644 - 8716
Alignment:
Q  235 tataactgggatggatcacgtaacataatttaaaagattaacttttgttaacaaaggaagagattacctgaaa 307  Q
    ||||||| ||| |||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  8644 tataacttggacggatcatgtaacataatttaaaagattaagttttgttaacaaaggaagaaattacctgaaa 8716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 8695 - 8771
Alignment:
Q  11 caaaggaagagagtacctgaaagtgtaagaacaaacaatcgtagatctttgtcggaaaaacacaaactgagatctgc 87  Q
    |||||||||| | ||||||||| |||||||||||| ||    |||||||||||  ||||||||||||||||||||||    
T  8695 caaaggaagaaattacctgaaaatgtaagaacaaataaattgagatctttgtcacaaaaacacaaactgagatctgc 8771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2089 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold2089
Description:

Target: scaffold2089; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 247 - 339
Target Start/End: Complemental strand, 1054 - 968
Alignment:
Q  247 ggatcacgtaacataatttaaaagattaacttttgttaacaaaggaagagattacctgaaactgaaagtgtgagaagaaacaaactgagatct 339  Q
    |||||| |||||||||||| ||||||||| | |||||||||||||||||||||||||      ||||||||||||| ||||||||| ||||||    
T  1054 ggatcatgtaacataatttgaaagattaagtgttgttaacaaaggaagagattacct------gaaagtgtgagaacaaacaaactaagatct 968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2089; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 1015 - 964
Alignment:
Q  11 caaaggaagagagtacctgaaagtgtaagaacaaacaatcgtagatctttgt 62  Q
    |||||||||||| ||||||||||||| ||||||||||| |  ||||||||||    
T  1015 caaaggaagagattacctgaaagtgtgagaacaaacaaactaagatctttgt 964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Complemental strand, 5317 - 5281
Alignment:
Q  267 aaagattaacttttgttaacaaaggaagagattacct 303  Q
    |||||||||||||||||||||||  ||||||||||||    
T  5317 aaagattaacttttgttaacaaataaagagattacct 5281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University