View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_low_44 (Length: 334)
Name: NF20071_low_44
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 5 - 315
Target Start/End: Complemental strand, 56298968 - 56298639
Alignment:
| Q |
5 |
ggtggcaaaaaaggacaagttcgtcgtattgtatgtgtcaatcatgtaccgaccaaaaaagaa-tcgtttgtctcgtatatctttatggtatttgtgttt |
103 |
Q |
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| T |
56298968 |
ggtggcaaaaaaggacaagttcgtcgtattgtatgtgtcaatcttgtaccgaccagaaaagaaatcgtttgtctcgtatatctttatggtatttgtgttt |
56298869 |
T |
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| Q |
104 |
aatttaaccgtccaacctatatctaatttttgga-------aagacattatccatatatgctgttgacatcacttatatgcatctttcag-----ttaat |
191 |
Q |
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| T |
56298868 |
agtttaaccgtccaaccaatatctaatttgtggaaagacttaagacattatccatatatgctattggcatcacttatatgcatctttcagattaattaat |
56298769 |
T |
|
| Q |
192 |
tgatcaaataataggagttctggcaccgtcatacattcgatcgagtagtgatttaatcatttccttgta------tattaatcatcaatatcttatctaa |
285 |
Q |
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| T |
56298768 |
tgatcaaataataggagttctggcaccgtcatacattcgatcgagtagtgatttaatcatttccttatataatagtattaatcatcaatatcttatctaa |
56298669 |
T |
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| Q |
286 |
tttgcagacaaatttttagattactcttca |
315 |
Q |
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| T |
56298668 |
tttgcagacaaatttttagattactcttca |
56298639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 4286293 - 4286236
Alignment:
| Q |
128 |
aatttttggaaagacattatccatatatgctgttgacatcacttatatgcatctttca |
185 |
Q |
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| T |
4286293 |
aatttgtggaaagacattatccatatatgttattggcatcacttatatgcatcgttca |
4286236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 40220808 - 40220763
Alignment:
| Q |
128 |
aatttttggaaagacattatccatatatgctgttgacatcacttat |
173 |
Q |
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| T |
40220808 |
aatttgtggaaagacatcatccatatatgctattggcatcacttat |
40220763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 48590213 - 48590264
Alignment:
| Q |
128 |
aatttttggaaagacattatccatatatgctgttgacatcacttatatgcat |
179 |
Q |
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| T |
48590213 |
aatttgtggaaagacatcatccatatatgctattggcatcacttatatgcat |
48590264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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