View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20071_low_46 (Length: 321)
Name: NF20071_low_46
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_46 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 304
Target Start/End: Complemental strand, 43007318 - 43007027
Alignment:
| Q |
13 |
caaaggtcacaacgatagaataaaaggcaggggaggagggtgtccaatcgcatatatacatcaaacactccaaaaacctacaaaaatgtgaaattctaat |
112 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43007318 |
caaaggtcacaaccatagattaaaaggcaggggatgagggtgtccaatcgcatatatacatcaaacactccaaaaacctaaaaaaatgtgaaattctaat |
43007219 |
T |
|
| Q |
113 |
acaacttcaatatcgaccctcacgtcaagtgtgagtcatgtgttatattcctacattacaatatgtaatcagatgttcttactctatttgataccatgtt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43007218 |
acaacttcaatatcgaccctcacgtcaagtgtgagtcatgtgctatattcctacattacaatatgtaatcagatgttcttactctatttgataccatgtt |
43007119 |
T |
|
| Q |
213 |
aaattggtttgaatctcatcctaaaagttagtttaaaaaataagagtgttcaaacaaatttatacctcaaagaatatgaatagcatgagact |
304 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43007118 |
aaattggtttgaatcttatcccaaaagttagtttaaaaaataagagtgttcaaacaaatttatacctcaaagaatatgaatagcatgagact |
43007027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 277
Target Start/End: Complemental strand, 27134241 - 27134163
Alignment:
| Q |
199 |
tttgataccatgttaaattggtttgaatctcatcctaaaagttagtttaaaaaataagagtgttcaaacaaatttatac |
277 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| || ||||| || ||||| ||||||| |||||||| |
|
|
| T |
27134241 |
tttgataccatgttaaatgagtttgaatctcatcctaaaagctaagttaaaggatgagagtagtcaaacatatttatac |
27134163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 277
Target Start/End: Original strand, 47671754 - 47671824
Alignment:
| Q |
207 |
catgttaaattggtttgaatctcatcctaaaagttagtttaaaaaataagagtgttcaaacaaatttatac |
277 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||| | ||||||||||| |||||||| |||||||| |
|
|
| T |
47671754 |
catgttaaatgagtttgaatctcatcccaaaagttagataaaaaaataagaacattcaaacacatttatac |
47671824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 23564540 - 23564582
Alignment:
| Q |
201 |
tgataccatgttaaattggtttgaatctcatcctaaaagttag |
243 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| ||||||||| |
|
|
| T |
23564540 |
tgataccatgttaaataggtttggatctcatcccaaaagttag |
23564582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 8837026 - 8837058
Alignment:
| Q |
201 |
tgataccatgttaaattggtttgaatctcatcc |
233 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
8837026 |
tgataccatgttaaataggtttgaatctcatcc |
8837058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 55240510 - 55240474
Alignment:
| Q |
203 |
ataccatgttaaattggtttgaatctcatcctaaaag |
239 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
55240510 |
ataccatgttaaattggcttgaatctcatcccaaaag |
55240474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 50196986 - 50196942
Alignment:
| Q |
199 |
tttgataccatgttaaattggtttgaatctcatcctaaaagttag |
243 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||| ||||||||| |
|
|
| T |
50196986 |
tttgataccatgttaaataggtttggatctcatcccaaaagttag |
50196942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 33408175 - 33408217
Alignment:
| Q |
201 |
tgataccatgttaaattggtttgaatctcatcctaaaagttag |
243 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
33408175 |
tgataccatgttaaatgagtttgaatctcatcccaaaagttag |
33408217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 33804319 - 33804363
Alignment:
| Q |
201 |
tgataccatgttaaattggtttgaatctcatcctaaaagttagtt |
245 |
Q |
| |
|
|||||||||||||||| || |||||||||||| ||||||||||| |
|
|
| T |
33804319 |
tgataccatgttaaataggcatgaatctcatcccaaaagttagtt |
33804363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University