View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_low_53 (Length: 289)
Name: NF20071_low_53
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 39952056 - 39951799
Alignment:
| Q |
19 |
aaatctaatacatattttaacaacaaaatcagagtgcccatggataaagataaacgattgaatattttcaggcaatgagtggatcatacccattatcaac |
118 |
Q |
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| T |
39952056 |
aaatctaatacatattttaacaacaaaatcagagtgcccatggataaagataaacgattgaatattttcaggcaatgagtagatcatacccattatcaac |
39951957 |
T |
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| Q |
119 |
ttgaagcctcggtgttgtggttgctgtcatgaaatagcatccatttggagaccattcacttgacacagaccattcaagttgtttcctttctacgtaatcc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39951956 |
ttgaagcctcggtgttgtggttgctgtcatgaaatagcacccatttggagaccattcacttgacacagaccattcaagttgtttcctttctacgtaatcc |
39951857 |
T |
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| Q |
219 |
caaaaatacctagaacagcataatgaaaaatacatgaattcttcttacgaagtaaatg |
276 |
Q |
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| T |
39951856 |
caaaaatacctagaacagcataatgaaaaatacatgaattcttcatacgaagtaaatg |
39951799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 36 - 276
Target Start/End: Original strand, 34230589 - 34230865
Alignment:
| Q |
36 |
taacaacaaaatcagagtgcccatggataaagataaacgattgaatattttcaggcaatgagtggatca----------------------tacccatta |
113 |
Q |
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| T |
34230589 |
taacaacataatcagagtgcccatggataaagataaacaattgaatattttcaggcaatgagtagatcaaggccccaccagtggaaagacatacccatta |
34230688 |
T |
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| Q |
114 |
tcaacttgaagcctcggtgttgtggttgctgtcatgaaatagcatccatttggagaccattcacttgacacagaccatt---------------caagtt |
198 |
Q |
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| T |
34230689 |
tcaacttgaagccttggagctgttgttgctgtcatgaaatagcacccatctggagaccattcacttgacacagaccattcagctttggttgatgcaagct |
34230788 |
T |
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| Q |
199 |
gtttcctttctacgtaatcccaaaaatacctagaacagcataatgaaaaatacatgaattcttcttacgaagtaaatg |
276 |
Q |
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|||||||||| |||||||||| ||||||||||||||| |||||||||||| |||||||||| || ||||||| ||||| |
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| T |
34230789 |
gtttcctttccacgtaatccc-aaaatacctagaacaacataatgaaaaacacatgaattcctcatacgaagcaaatg |
34230865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 30339394 - 30339345
Alignment:
| Q |
35 |
ttaacaacaaaatcagagtgcccatggataaagataaacgattgaatatt |
84 |
Q |
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| T |
30339394 |
ttaacaacaaaatcagagtgcccatggataaagataaacaattgaatatt |
30339345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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