View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_low_56 (Length: 270)
Name: NF20071_low_56
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_56 |
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| [»] scaffold0405 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 7e-58; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 9695207 - 9695332
Alignment:
| Q |
19 |
cgttgaagttcgatttgattctgatgattttcttt-ttgttgtgatttttaggtctgagttcagagagaggttcaagaaggagaatccaagcaacaagtc |
117 |
Q |
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| T |
9695207 |
cgttgaagttcgatttgattctgatgattttttttgttgttgtgatttttaggtctgagttcagagagaggttcaagaaggagaatccaagcaacaagtc |
9695306 |
T |
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| Q |
118 |
cgttgctgtggtgagatttctgacgc |
143 |
Q |
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| T |
9695307 |
cgttgctgtggtgagatttctgacgc |
9695332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 9695388 - 9695457
Alignment:
| Q |
199 |
ctaacgtgatttacggtgaatttgaatcaggttgggaaagccggtggaaaggaatggaaagctctctctg |
268 |
Q |
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| T |
9695388 |
ctaacgtgatttacggtgaatttgaatcaggttgggaaagccggtggaaaggaatggaaagctctgtctg |
9695457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 199 - 257
Target Start/End: Complemental strand, 30440189 - 30440131
Alignment:
| Q |
199 |
ctaacgtgatttacggtgaatttgaatcaggttgggaaagccggtggaaaggaatggaa |
257 |
Q |
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| T |
30440189 |
ctaacgtgatttacggtgaatttgaattaggttgggaaagttggtggaaaggaatggaa |
30440131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 132
Target Start/End: Complemental strand, 30440355 - 30440258
Alignment:
| Q |
33 |
ttgattctgatgattttctttttgttgtgatttttaggtctgagttcagagagaggttcaag-aaggagaatccaagcaacaagtccgttgctgtggtga |
131 |
Q |
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| T |
30440355 |
ttgattctgatgatttttgttttgt---gatttttaggtctgaattcagagagaggtttaagaaaagagaatccaagcaacaaatccattgtcgtggtga |
30440259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 19208053 - 19208014
Alignment:
| Q |
60 |
tgatttttaggtctgagttcagagagaggttcaagaagga |
99 |
Q |
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| T |
19208053 |
tgatttttaggtctgagttcagagagactttcaagaagga |
19208014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 15296 - 15174
Alignment:
| Q |
20 |
gttgaagttcgatttgattctgatgattttctttttgttgtgatttttaggtctgagttcagagagaggttcaagaaggagaatccaagcaacaagtccg |
119 |
Q |
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| T |
15296 |
gttgaagttcgatttgattctgatgatttttgttttgt---gatttttaggtctgaatttagagagaggttcaagaaagagaattcaagcaacaaatccg |
15200 |
T |
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| Q |
120 |
ttgctgtggtgagatttctgacgcga |
145 |
Q |
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| T |
15199 |
ttgttgtggtgagttttgtgaagcga |
15174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 15111 - 15071
Alignment:
| Q |
213 |
ggtgaatttgaatcaggttgggaaagccggtggaaaggaat |
253 |
Q |
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| T |
15111 |
ggtgaatttgaattaggttgggaaagctggtggaaaagaat |
15071 |
T |
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