View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20071_low_58 (Length: 263)
Name: NF20071_low_58
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_58 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 29333509 - 29333750
Alignment:
| Q |
8 |
tgatatgaaaattgtgaataatgattcgtccttggaattcgcgtactcgtcgattacttcttgaagcaatgaaagatcgttggattgaagaatcgtttcg |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
29333509 |
tgatttgaaaattgtgaataatgattcgtccttggaattcgcgtactcgtcgattacttcttgaagcgatgaaagatcgttggattgaagaatcgttgcg |
29333608 |
T |
|
| Q |
108 |
acgtgttgttgaagttcgaagccatggaggagtgattcgtcttggttttcttcgatgcgtcttcgtttgttgactatttcttccaagtagttgcgcggtg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333609 |
acgtgttgttgaagttcgaagccatggaggagtgattcgtcttggttttcttcgatgcgtcttcgtttgttgactatttcttccaagtagttgcgcggtg |
29333708 |
T |
|
| Q |
208 |
gcgggtttatatccggttcgaaagggttgcgaagtgaagatt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29333709 |
gcgggtttatatccggttcgaaagggttgcgaagggaagatt |
29333750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 223
Target Start/End: Original strand, 29322419 - 29322533
Alignment:
| Q |
109 |
cgtgttgttgaagttcgaagccatggaggagtgattcgtcttggttttcttcgatgcgtcttcgtttgttgactatttcttccaagtagttgcgcggtgg |
208 |
Q |
| |
|
|||||| |||||||| || ||| |||| |||||||| |||||||| | ||||||||| |||| ||||| | |||||||||||||| |||||| |||| |
|
|
| T |
29322419 |
cgtgttcttgaagttggaggccgtggatgagtgatttatcttggttgtgttcgatgcgccttctcttgttcattatttcttccaagtgattgcgcagtgg |
29322518 |
T |
|
| Q |
209 |
cgggtttatatccgg |
223 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
29322519 |
tgggtttatatccgg |
29322533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 164
Target Start/End: Original strand, 29305205 - 29305285
Alignment:
| Q |
84 |
tcgttggattgaagaatcgtttcgacgtgttgttgaagttcgaagccatggaggagtgattcgtcttggttttcttcgatg |
164 |
Q |
| |
|
||||||||| | |||| | ||||| |||||||| ||||||||||||| |||| ||||||| ||||||||||||||||||| |
|
|
| T |
29305205 |
tcgttggataggagaaacctttcggcgtgttgtcgaagttcgaagccgtggatgagtgatctgtcttggttttcttcgatg |
29305285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University