View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_low_6 (Length: 583)
Name: NF20071_low_6
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 203 - 566
Target Start/End: Complemental strand, 6994763 - 6994415
Alignment:
| Q |
203 |
ttattttgaagaatgtattcaaatatatatagttaacaagaggatttggcatataacatggttttggtgcagggagcagtatcacccaacattgcagcta |
302 |
Q |
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| T |
6994763 |
ttattttgaagaatgtattcaaatata----gttaacaagaggatttggcatataacatggttttggtgcagggagcagtatcacccaacattgcagcta |
6994668 |
T |
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| Q |
303 |
tgttacatagtcagtcaagtaccacttccacatctcagcttggaggtactttcaactctttcatcatatatttattgattttcatgttccaaattaatta |
402 |
Q |
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| T |
6994667 |
tgttacatagtcagtcaagtaccacttccacatctcagcttggaggtactttcaactctttcatcatatatttattgattttcatgttccaaattaatta |
6994568 |
T |
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| Q |
403 |
catataatataattcctcacataaacccttttgatttattacagatgaagatgcttcattgccacctagaccttcttcaatgcaaaccaatacttctgat |
502 |
Q |
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| T |
6994567 |
catataatat----------ataaaccc-tttgatttattacagatgaagatgcttcattgccacctagaccttcttcaatgcaaaccaatacttctgat |
6994479 |
T |
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| Q |
503 |
gcaggaaattcctatgcagaagatcgtcaatcagatggtatgtactaaatatcattaatcatct |
566 |
Q |
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| T |
6994478 |
gcaggaaattcctatgcagaggatcgtcaatcagatggtatgtactaaatatcattaatcatct |
6994415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 6995016 - 6994872
Alignment:
| Q |
10 |
attattctgtttatgtctgaattagtttaaaaaa-tagaaaaatataattacagcannnnnnnnn---caattatcttttaaaaaatagaatgaaataaa |
105 |
Q |
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| T |
6995016 |
attattctgtttatgtctgaattagtttaaaaaaatagaaaaatataattacagcattttttttctttcaattatcttttaaaaaatagaatgaaataaa |
6994917 |
T |
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| Q |
106 |
atgtaataacctctgtttttgtagcattttatttatattcaattt |
150 |
Q |
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| T |
6994916 |
atgtaataacctctgtttttgtagcattttattaatattcaattt |
6994872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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