View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_low_61 (Length: 255)
Name: NF20071_low_61
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_61 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 29233193 - 29232955
Alignment:
| Q |
17 |
agagtcttcatgttaaggactatatgtactgatcaaattgttggtgtgtgtatccctttgagactagaagagggttgaatttcttgtttatgattatcgt |
116 |
Q |
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| T |
29233193 |
agagtcttcatgttaaggactataagtactgatcaaattgttggtgtgtgtatcccttagagactagaagagggttgaatttcttgtttatgattatcgt |
29233094 |
T |
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| Q |
117 |
ggctttgttaccgtagtttgttatttatacccccatcctaaattaatccataattgaatttggtttaacatatagtacatatatattttaaaacaaatgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29233093 |
ggctttgttaccgtagtttgttatttatacccccatcctaaattaatccataattgaatttggtttaacatatagtacatatatattttaaaacaaatgt |
29232994 |
T |
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| Q |
217 |
cgttcgaactaataacttcttgaaaattcttgttatttt |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
29232993 |
cgttcgaactaataacttcttgaaaattcttgttatttt |
29232955 |
T |
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