View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_low_65 (Length: 247)
Name: NF20071_low_65
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_65 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 41368105 - 41367888
Alignment:
| Q |
1 |
ttgtaagttttccatttaatgtaattgtgtcgaaatatttttcggttagagttgtgcccacataagagttgctcatctaagccattgcaatcccaacaaa |
100 |
Q |
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| T |
41368105 |
ttgtaatttttccatttaatctaattgtgtcgaaatatttttcagttagagttgtgccgacagaagagttgctcatctaagccattgcaatcccaacaaa |
41368006 |
T |
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| Q |
101 |
ctaagtgaagaaaacacacaactagccatcccaaacaagagttgcaggcttgaatattgaaggctagaaccatatagaggtgtgatttccgtgaaaagtg |
200 |
Q |
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| T |
41368005 |
ctaagtgaagaaaaaacacaactagccatcccaaataagagttgcagacttgaatattgaaggctagaacc-------------atttccgtgaaaagtg |
41367919 |
T |
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| Q |
201 |
tcattgttgaaaatgctatcgcgagagtttt |
231 |
Q |
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| T |
41367918 |
tcattgttgaaaatgctatcgcgagagtttt |
41367888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 81 - 231
Target Start/End: Complemental strand, 44281859 - 44281708
Alignment:
| Q |
81 |
gccattgcaatcccaacaaactaagtgaagaaaacacacaactagccatccc-aaacaagagttgcagg-cttgaatattgaaggctagaaccatataga |
178 |
Q |
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||||||||||||||||||||| ||||||||||| || ||||| | ||||||| |||||||| ||||||| | || ||| |||||||||||||||| ||| |
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| T |
44281859 |
gccattgcaatcccaacaaaccaagtgaagaaa-caaacaacaacccatccccaaacaagacttgcagggcctgcatacagaaggctagaaccatacaga |
44281761 |
T |
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| Q |
179 |
ggtgtgatttccgtgaaaagtgtcattgttgaaaatgctatcgcgagagtttt |
231 |
Q |
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| T |
44281760 |
ggcgtgattccagtgaaaagcgtcattgttgaaaatgctatcgcaagagtttt |
44281708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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