View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20071_low_66 (Length: 247)

Name: NF20071_low_66
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20071_low_66
NF20071_low_66
[»] chr5 (2 HSPs)
chr5 (1-237)||(15369501-15369735)
chr5 (1-49)||(16946302-16946350)
[»] chr8 (7 HSPs)
chr8 (1-49)||(9577713-9577761)
chr8 (1-49)||(13009789-13009837)
chr8 (1-49)||(13011029-13011077)
chr8 (1-49)||(13117863-13117911)
chr8 (1-49)||(13135599-13135647)
chr8 (1-49)||(18668981-18669029)
chr8 (1-49)||(26442009-26442057)
[»] chr7 (4 HSPs)
chr7 (1-49)||(41866262-41866310)
chr7 (1-49)||(28261754-28261802)
chr7 (1-50)||(48918554-48918603)
chr7 (5-42)||(31656835-31656872)
[»] chr4 (6 HSPs)
chr4 (1-50)||(56191432-56191481)
chr4 (1-49)||(23458689-23458737)
chr4 (1-49)||(42636418-42636466)
chr4 (1-49)||(56435082-56435130)
chr4 (1-42)||(20916804-20916845)
chr4 (1-41)||(31032773-31032813)
[»] scaffold0971 (1 HSPs)
scaffold0971 (1-49)||(1336-1384)
[»] scaffold0899 (1 HSPs)
scaffold0899 (1-49)||(2478-2526)
[»] chr6 (1 HSPs)
chr6 (1-49)||(29022888-29022936)
[»] chr2 (2 HSPs)
chr2 (1-49)||(2388833-2388881)
chr2 (1-42)||(35514130-35514171)
[»] chr1 (1 HSPs)
chr1 (1-49)||(45764995-45765043)
[»] chr3 (2 HSPs)
chr3 (1-42)||(26379277-26379318)
chr3 (1-42)||(29383706-29383747)


Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 15369501 - 15369735
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagccagccttttcacnnnnnnngaccaattgttcggctttcttttgttgatacaga 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||  || ||       |||||||||||| |||||||||||||||||||||    
T  15369501 cgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccagccactttactttttttgaccaattgttctgctttcttttgttgatacaga 15369600  T
Q  101 taaatgtgaattcgatcatatttcatcattcagagccttgcttatcccacccccacacaaacgttttgggagataaataataaataggggtcaaaagagc 200  Q
      ||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15369601 --aatgttaattcgatcatatttcatcattaagagccttgcttatcccacccccacagaaacgttttgggagataaataataaataggggtcaaaagagc 15369698  T
Q  201 aaacatttatcactagcttaagtataaattgtatttt 237  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  15369699 aaacatttatcactagcttaagtatagattttatttt 15369735  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 16946350 - 16946302
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 49  Q
    |||||||||||||||||||||||| || ||||||  | |||||||||||    
T  16946350 cgtcagtctaacacactgaaggtctccggttcgagtccgggcgaagcca 16946302  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 9577713 - 9577761
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 49  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9577713 cgtcagtctaacacactgaaggtccccagttcaaacctgggcgaagcca 9577761  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13009837 - 13009789
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 49  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13009837 cgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 13009789  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13011077 - 13011029
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 49  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13011077 cgtcagtctaacacactgaaggtccccagttcaaacctgggcgaagcca 13011029  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13117863 - 13117911
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 49  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13117863 cgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 13117911  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13135599 - 13135647
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 49  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13135599 cgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 13135647  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 18669029 - 18668981
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 49  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18669029 cgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 18668981  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 26442057 - 26442009
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 49  Q
    |||||||||||||||||||||||| || ||||||||| |||||||||||    
T  26442057 cgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 26442009  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41866310 - 41866262
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 49  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41866310 cgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 41866262  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28261802 - 28261754
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 49  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||    
T  28261802 cgtcagtctaacacactgaaggtccccagttctagcctgggcgaagcca 28261754  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 48918603 - 48918554
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagccag 50  Q
    |||||||||||||||||||||||| || ||||||||| ||||||||||||    
T  48918603 cgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagccag 48918554  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 31656872 - 31656835
Alignment:
Q  5 agtctaacacactgaaggtccccagttcgaacctgggc 42  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  31656872 agtctcacacactaaaggtccccagttcgaacctgggc 31656835  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 56191481 - 56191432
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagccag 50  Q
    |||||||||||||||||||||||| || ||||||||| ||||||||||||    
T  56191481 cgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagccag 56191432  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 23458737 - 23458689
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 49  Q
    |||||||||||||||||||||||| || ||||||||| |||||||||||    
T  23458737 cgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 23458689  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42636418 - 42636466
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 49  Q
    |||||||||||||||||||||||| || ||||||||| |||||||||||    
T  42636418 cgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 42636466  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 56435082 - 56435130
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 49  Q
    |||||||||||||||||||||||| || ||||||||| |||||||||||    
T  56435082 cgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 56435130  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 20916845 - 20916804
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctgggc 42  Q
    ||||||||| |||||||||||||| ||||||||| |||||||    
T  20916845 cgtcagtcttacacactgaaggtctccagttcgatcctgggc 20916804  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 31032773 - 31032813
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctggg 41  Q
    ||||||||| |||||||||||||| ||||||||| ||||||    
T  31032773 cgtcagtcttacacactgaaggtctccagttcgatcctggg 31032813  T

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Target: scaffold0971 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0971
Description:

Target: scaffold0971; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1384 - 1336
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 49  Q
    |||||||||||||||||||||||| || ||||||||| |||||||||||    
T  1384 cgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 1336  T

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Target: scaffold0899 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0899
Description:

Target: scaffold0899; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2478 - 2526
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 49  Q
    |||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  2478 cgtcagtctaacacactgaaggtctccagtttgaaccagggcgaagcca 2526  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29022888 - 29022936
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 49  Q
    |||||||||||||||||||||||| || ||||||||| |||||||||||    
T  29022888 cgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 29022936  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2388833 - 2388881
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 49  Q
    |||||||||||||||||||||||| || ||||||||| |||||||||||    
T  2388833 cgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 2388881  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 35514130 - 35514171
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctgggc 42  Q
    ||||||||| |||||||||||||| ||||||||| |||||||    
T  35514130 cgtcagtcttacacactgaaggtctccagttcgatcctgggc 35514171  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 45765043 - 45764995
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 49  Q
    |||||||||||||||||||||||| || ||||||||| |||||||||||    
T  45765043 cgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 45764995  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 26379318 - 26379277
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctgggc 42  Q
    ||||||||| |||||||||||||| ||||||||| |||||||    
T  26379318 cgtcagtcttacacactgaaggtctccagttcgatcctgggc 26379277  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29383706 - 29383747
Alignment:
Q  1 cgtcagtctaacacactgaaggtccccagttcgaacctgggc 42  Q
    ||||||||| |||||||||||||| ||||||||| |||||||    
T  29383706 cgtcagtcttacacactgaaggtctccagttcgatcctgggc 29383747  T

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