View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20071_low_69 (Length: 243)

Name: NF20071_low_69
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20071_low_69
NF20071_low_69
[»] chr8 (2 HSPs)
chr8 (1-234)||(1273561-1273794)
chr8 (27-60)||(29319087-29319120)
[»] chr5 (3 HSPs)
chr5 (1-165)||(19567755-19567919)
chr5 (57-165)||(23278106-23278214)
chr5 (27-59)||(26058543-26058575)
[»] chr1 (2 HSPs)
chr1 (1-124)||(23299994-23300117)
chr1 (62-142)||(16025001-16025082)
[»] chr4 (1 HSPs)
chr4 (57-154)||(11864138-11864235)
[»] chr7 (3 HSPs)
chr7 (57-154)||(11240207-11240303)
chr7 (62-151)||(16203289-16203377)
chr7 (62-149)||(6019275-6019360)
[»] scaffold0485 (1 HSPs)
scaffold0485 (13-138)||(4168-4292)
[»] scaffold0113 (2 HSPs)
scaffold0113 (27-57)||(23813-23843)
scaffold0113 (42-88)||(23870-23915)
[»] chr3 (2 HSPs)
chr3 (27-60)||(2278964-2278997)
chr3 (27-60)||(10289606-10289639)
[»] chr2 (1 HSPs)
chr2 (30-109)||(9960812-9960891)


Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 1273561 - 1273794
Alignment:
Q  1 taggataattgtatccaagtggtgatttaggatatttcaatatccaagtggagataggattaatcggtaaaataattccgacatccaaaaacggtaccgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1273561 taggataattgtatccaagtggtgatttaggatatttcaatatccaagtggagataggattaatcggtaaaataattccgacatccaaaaacggtaccgt 1273660  T
Q  101 atacatatagaattgtgtctagagcattgcattcatatgaatctatgtgaaatgatttatacttgttgaatctatgtgaattttcttctacatcaacatg 200  Q
    ||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1273661 atgaatatagaattgtgtctagagcattgcatgcatatgaatctatgtgaaatgatttatacttgttgaatctatgtgaattttcttctacatcaacatg 1273760  T
Q  201 tatattgtatagttcattcccatcaaagtattat 234  Q
    ||||||||||||||||||||||||||||||||||    
T  1273761 tatattgtatagttcattcccatcaaagtattat 1273794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 29319120 - 29319087
Alignment:
Q  27 ttaggatatttcaatatccaagtggagataggat 60  Q
    ||||||||||||||||||||||| ||||||||||    
T  29319120 ttaggatatttcaatatccaagtagagataggat 29319087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 19567755 - 19567919
Alignment:
Q  1 taggataattgtatccaagtggtgatttaggatatttcaatatccaagtggagataggattaatcggtaaaataattccgacatccaaaaacggtaccgt 100  Q
    |||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| || ||||||| |||| ||||||      
T  19567755 taggataattttatccaagtggtgattaaggatacttcaatatccaagtggagataggattaatcggtaaaataactctgacatccgaaaatggtaccac 19567854  T
Q  101 atacatatagaattgtgtctagagcattgcattcatatgaatctatgtgaaatgatttatacttg 165  Q
    ||||||||| ||| |||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  19567855 atacatataaaatggtgcgtagagcattgcatgcatatgaatctatgtgaaatgatttatacttg 19567919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 165
Target Start/End: Original strand, 23278106 - 23278214
Alignment:
Q  57 ggattaatcggtaaaataattccgacatccaaaaacggtaccgtatacatatagaattgtgtctagagcattgcattcatatgaatctatgtgaaatgat 156  Q
    |||| |||||||||||||| | |||||| |||||||||||| | || |||||||||| |||||||||||||||||| ||||| ||| ||| |||||||||    
T  23278106 ggatcaatcggtaaaataacttcgacattcaaaaacggtactgcatgcatatagaatggtgtctagagcattgcatgcatataaatatatttgaaatgat 23278205  T
Q  157 ttatacttg 165  Q
    |||||||||    
T  23278206 ttatacttg 23278214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 26058575 - 26058543
Alignment:
Q  27 ttaggatatttcaatatccaagtggagatagga 59  Q
    |||||||||||||||||||||||||||| ||||    
T  26058575 ttaggatatttcaatatccaagtggagagagga 26058543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 23299994 - 23300117
Alignment:
Q  1 taggataattgtatccaagtggtgatttaggatatttcaatatccaagtggagataggattaatcggtaaaataattccgacatccaaaaacggtaccgt 100  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||| |||||| |||| |||||||||||||  ||||||||| |||||||||||      
T  23299994 taggataattttatccaagtgatgatttaggatatttcaatatccaagttgagatatgattgatcggtaaaataaccccgacatccgaaaacggtaccac 23300093  T
Q  101 atacatatagaattgtgtctagag 124  Q
    || ||| || ||| ||||||||||    
T  23300094 atgcatgtaaaatggtgtctagag 23300117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 16025082 - 16025001
Alignment:
Q  62 aatcggtaaaataattccgacatccaaa-aacggtaccgtatacatatagaattgtgtctagagcattgcattcatatgaat 142  Q
    |||||||||||||| | ||||||||||| || ||||||||||| ||||||| ||||||||||  ||||| || |||||||||    
T  16025082 aatcggtaaaataacttcgacatccaaagaatggtaccgtatagatatagagttgtgtctagcacattgtatgcatatgaat 16025001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 154
Target Start/End: Original strand, 11864138 - 11864235
Alignment:
Q  57 ggattaatcggtaaaataattccgacatccaaaaacggtaccgtatacatatagaattgtgtctagagcattgcattcatatgaatctatgtgaaatg 154  Q
    |||| |||||||||||||| ||||||||| ||||| | ||||| || ||| |||| |||||||||||| ||||||| |||| ||||||||| ||||||    
T  11864138 ggatcaatcggtaaaataactccgacatctaaaaatgataccgcatgcatgtagagttgtgtctagagaattgcatgcataagaatctatgggaaatg 11864235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 154
Target Start/End: Original strand, 11240207 - 11240303
Alignment:
Q  57 ggattaatcggtaaaataattccgacatccaaaaacggtaccgtatacatatagaattgtgtctagagcattgcattcatatgaatctatgtgaaatg 154  Q
    |||| |||||||||| ||| ||| ||||||||||| |||||   ||||||  ||| ||||||||||| |||||||| |||||||||||||||| ||||    
T  11240207 ggatcaatcggtaaa-taactccaacatccaaaaatggtacgacatacatgcagagttgtgtctagaacattgcatgcatatgaatctatgtgcaatg 11240303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 16203289 - 16203377
Alignment:
Q  62 aatcggtaaaataattccgacatccaaaaacggtaccgtatacatatagaattgtgtctagagcattgcattcatatgaatctatgtgaa 151  Q
    |||||||||||||| |||||||||| |||||||||||   | ||| |||| | |||| || ||||||| || ||||||||||||||||||    
T  16203289 aatcggtaaaataactccgacatcc-aaaacggtaccacgtgcatgtagagtcgtgtataaagcattgtatgcatatgaatctatgtgaa 16203377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 149
Target Start/End: Original strand, 6019275 - 6019360
Alignment:
Q  62 aatcggtaaaataattccgacatccaaaaacggtaccgtatacatatagaattgtgtctagagcattgcattcatatgaatctatgtg 149  Q
    ||||||||| |||| ||||||||||||||| ||||||  || |||||||||| | |  ||||| ||| ||| ||||||| ||||||||    
T  6019275 aatcggtaacataactccgacatccaaaaatggtaccacatgcatatagaatcgag--tagagtattacatgcatatgagtctatgtg 6019360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0485 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 4292 - 4168
Alignment:
Q  13 atccaagtggtgatttaggatatttcaatatccaagtggagataggattaatcggtaaaataattccgacatccaaa-aacggtaccgtatacatataga 111  Q
    |||||||||||||   ||||||||  ||||||||||||  ||| |||| ||| ||||| |||| ||||||||||||| || ||||||| || |||||| |    
T  4292 atccaagtggtgaa--aggatattgtaatatccaagtgatgatgggatcaattggtaacataactccgacatccaaagaatggtaccgcatgcatatata 4195  T
Q  112 attgtgtctagagcattgcattcatat 138  Q
    ||  |||||||| |||||||| |||||    
T  4194 atcatgtctagaacattgcatgcatat 4168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 57
Target Start/End: Original strand, 23813 - 23843
Alignment:
Q  27 ttaggatatttcaatatccaagtggagatag 57  Q
    |||||||||||||||||||||||||||||||    
T  23813 ttaggatatttcaatatccaagtggagatag 23843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 23870 - 23915
Alignment:
Q  42 atccaagtggagataggattaatcggtaaaataattccgacatccaa 88  Q
    |||||||||||||| ||||||||||||||||| | ||||||||||||    
T  23870 atccaagtggagat-ggattaatcggtaaaatgactccgacatccaa 23915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 2278997 - 2278964
Alignment:
Q  27 ttaggatatttcaatatccaagtggagataggat 60  Q
    ||||||||||| ||||||||||||||||||||||    
T  2278997 ttaggatattttaatatccaagtggagataggat 2278964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 10289639 - 10289606
Alignment:
Q  27 ttaggatatttcaatatccaagtggagataggat 60  Q
    |||||||||||||||||||||||| |||||||||    
T  10289639 ttaggatatttcaatatccaagtgaagataggat 10289606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 9960891 - 9960812
Alignment:
Q  30 ggatatttcaatatccaagtggagatag-gattaatcggtaaaataattccgacatccaaaaacggtaccgtatacatata 109  Q
    |||||| |||||||||| |||||||| | ||| |||||||||||| | || |||||||||||| ||||||| || ||||||    
T  9960891 ggatatgtcaatatcca-gtggagatggagatcaatcggtaaaatcactctgacatccaaaaatggtaccgcatgcatata 9960812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University