View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_low_7 (Length: 576)
Name: NF20071_low_7
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 513; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 20 - 559
Target Start/End: Complemental strand, 25323156 - 25322614
Alignment:
| Q |
20 |
aatgtcaaaagttagtgcacttgacacagtcggtttggttaaactgcatgattcaccaagtgcgtgttagattgacggtgaatttggcgaaatcaatgtg |
119 |
Q |
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| T |
25323156 |
aatgtcaaaagttagtgcacttgacacagtcggtttggttaaactgcatgattcaccaagtgcgtgttagattgacggtgaatttggcgaaatcaatgtg |
25323057 |
T |
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| Q |
120 |
acgtcatgattttgtcgaagtttcggagcgttgtttttgctaaaagcacgatggcataccgtgatactaccaaacccattgtcggtccaaacatgcatag |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25323056 |
acgtcatgattttgtcgaagtttcggagcgttgtttttgctaaaagcacgatggcataccgtgatactaccaaacccattgtcggtccaaacatgcatag |
25322957 |
T |
|
| Q |
220 |
tgccctaagtcaatttgattataattgtctagcattgaaatattctgttgcctatagttctaaccatcttattctcatgtatgaacagacggaaaaggac |
319 |
Q |
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| T |
25322956 |
tgcgctaagtcaatttgattataattgtctagcattgaactattatgttgcctatagttctaaccatcttattctcatgtatgaacagacggaaaaggat |
25322857 |
T |
|
| Q |
320 |
cggtaaatccaaaaggattacagtactacaacaatcttatagatgaattgataagccatggttctttcgaatactacattttccttttcggtcactttg- |
418 |
Q |
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| T |
25322856 |
cggtaaatccaaaaggattacagtactacaacaatcttatagatgaattgataagccatggttctttcgaatactacattttccttttcggtcactttga |
25322757 |
T |
|
| Q |
419 |
--actaacatcttagagaggttgatccaatgtcgatgcatatttacttttgttgttgtttctacatcttgtaggaatccaaccacatgttacattacatc |
516 |
Q |
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| T |
25322756 |
ctactaacatcttagagaggttgatccaatgtcgatgcatatttacttttgttgttgtttctacatcttgtaggaatccaaccacatgttacattacatc |
25322657 |
T |
|
| Q |
517 |
attgggatctaccacaaaaacttgaggatgaatatggaggatg |
559 |
Q |
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| T |
25322656 |
attgggatctaccacaaaaacttgaggatgaatatggaggatg |
25322614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 301
Target Start/End: Complemental strand, 25325691 - 25325586
Alignment:
| Q |
196 |
cattgtcggtccaaacatgcatagtgccctaagtcaatttgattataattgtctagcattgaaatattctgttgcctatagttctaaccatcttattctc |
295 |
Q |
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|||||| | ||||||||||||||||||||||| ||| ||||| |||| ||||||| || | || | || ||| | |||| |||||| ||||||||||||| |
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| T |
25325691 |
cattgttgttccaaacatgcatagtgccctaactcagtttgaatatagttgtctaacaataaattgttttgtcgactattgttctagccatcttattctc |
25325592 |
T |
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| Q |
296 |
atgtat |
301 |
Q |
| |
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|||||| |
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| T |
25325591 |
atgtat |
25325586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 487 - 559
Target Start/End: Complemental strand, 25328444 - 25328372
Alignment:
| Q |
487 |
taggaatccaaccacatgttacattacatcattgggatctaccacaaaaacttgaggatgaatatggaggatg |
559 |
Q |
| |
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|||||||| || ||||||||||||| || || |||||||||||||| |||||||||||| |||| |||||| |
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| T |
25328444 |
taggaatcgaagcacatgttacattgcaccactgggatctaccacagtcacttgaggatgagtatgaaggatg |
25328372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 484 - 559
Target Start/End: Complemental strand, 5219866 - 5219791
Alignment:
| Q |
484 |
ttgtaggaatccaaccacatgttacattacatcattgggatctaccacaaaaacttgaggatgaatatggaggatg |
559 |
Q |
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||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||| ||||||||||||||||| |
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| T |
5219866 |
ttgtaggaatccaaccacatgttactttaaatcactgggatctaccacaagcacttgaagatgaatatggaggatg |
5219791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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