View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_low_73 (Length: 239)
Name: NF20071_low_73
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_73 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 3921175 - 3921389
Alignment:
| Q |
1 |
aaacttgaagcaaaataaggaatacaaagtacaaatattaagaataacaagggaaccaataaaaaaccaacgaaagaatcaaagctcaaacttggtgttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3921175 |
aaacttgaagcaaaataaggaatacaaagtacaaatattaaaaataacaagggaaccaataaaaaaccaacgaaagaatcaaagctcaaacttggtgttg |
3921274 |
T |
|
| Q |
101 |
ttagagtagtccagacacaatgttgccatagtggctttcgagggggatgctcagatgacttttcagtttcaacggttgagatggcagccataacagtaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
3921275 |
ttagagtagtccagacacaatgttgccatagtggctttcgagggggatgctcatatgacttttctgtttcaacggttgagatggcagccatagcagtaag |
3921374 |
T |
|
| Q |
201 |
atatggaggcggtgg |
215 |
Q |
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||||||||||||||| |
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| T |
3921375 |
atatggaggcggtgg |
3921389 |
T |
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Back To:
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Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 42523177 - 42522996
Alignment:
| Q |
1 |
aaacttgaagcaaaataaggaatacaaagtacaaatattaagaataacaagggaaccaataaaaaaccaacgaaagaatcaaagctcaaacttggtgttg |
100 |
Q |
| |
|
||||||||||||||| ||| |||||||| ||||| || ||| ||||||||| || |||||||| ||||||||||| || | |||||||||| || |||| |
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| T |
42523177 |
aaacttgaagcaaaaaaagaaatacaaaacacaaaaatcaagcataacaaggaaaacaataaaacaccaacgaaagcattagagctcaaactcggcgttg |
42523078 |
T |
|
| Q |
101 |
ttagagtagtccagacacaatgttgccatagtggctttcgagggggatgctcagatgacttttcagtttcaacggttgagat |
182 |
Q |
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|| |||||||| ||||| |||| |||| ||||||||| ||||||| | ||||||||||||| |||||||| ||||||||| |
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| T |
42523077 |
ttggagtagtcagaacacagtgttaccatggtggctttcaagggggacgttcagatgactttttagtttcaatggttgagat |
42522996 |
T |
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