View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20071_low_74 (Length: 237)
Name: NF20071_low_74
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_74 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 37239492 - 37239269
Alignment:
| Q |
1 |
aagtgtcgagtttccaacttcaataagtttggtcaagccaaaatcagcaacctgaattcaaaaccattca--gagttaattaatgtaaaagaagaagtga |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37239492 |
aagtgtcgagtttccaacttcaataagtttggtcaagccaaaatcagcaacctgaattcaaaaccattcatagagttaattaatgtaaaagaagaagtga |
37239393 |
T |
|
| Q |
99 |
taaattaaaatttataatatagatcattaagattggtcaaattgcaacctttccacgcaaatttttgtctatcaatatatttgctgattttacgtcgcga |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37239392 |
taaattaaaatttataatatagatcattaagattggtcaaattgcaacctttccacgcaaatttttgtctatcaatatatttgctgattttacgtcgcga |
37239293 |
T |
|
| Q |
199 |
tggatataaacaggcacagtgtgt |
222 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
37239292 |
tggatataaacaggcacagtgtgt |
37239269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 37315945 - 37315730
Alignment:
| Q |
1 |
aagtgtcgagtttccaacttcaataagtttggtcaagccaaaatcagcaacctgaattca-aaaccattcagagtt-aattaatgtaaaagaagaag-tg |
97 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||| | ||||||| | |||| ||||||| | ||||||||| || |
|
|
| T |
37315945 |
aagtgtggagtttccaacttcaagaagtttggtcaagccaaaatctgcaacctgaatttagaaaccatgtatagtttaattaatattaaagaagaaaatg |
37315846 |
T |
|
| Q |
98 |
ataaattaaaatttataatatagatcattaagattggtcaaattgcaacctttccacgcaaatttttgtctatcaatatatttgctgattttacgtcgcg |
197 |
Q |
| |
|
| ||||| | | | |||| |||||||| |||| | | ||||||||||| || |||||||||||||||||||||||||||||||| || || |
|
|
| T |
37315845 |
agaaattggagcaaaaattata-----ttaagatttgtcacaaagttacctttccacgtaagtttttgtctatcaatatatttgctgattttacatcacg |
37315751 |
T |
|
| Q |
198 |
atggatataaacaggcacagt |
218 |
Q |
| |
|
||||||||| | ||||||||| |
|
|
| T |
37315750 |
atggatatacataggcacagt |
37315730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 36199664 - 36199592
Alignment:
| Q |
143 |
caacctttccacgcaaatttttgtctatcaatatatttgctgattttacgtcgcgatggatataaacaggcac |
215 |
Q |
| |
|
|||||||||| || || || |||||||||||||||||||||| |||| ||| ||||| ||||| |||||||| |
|
|
| T |
36199664 |
caacctttccccggaagttcttgtctatcaatatatttgctggctttatgtcacgatgaatatatacaggcac |
36199592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University