View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20071_low_75 (Length: 237)
Name: NF20071_low_75
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_75 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 15369485 - 15369262
Alignment:
| Q |
1 |
ccacgaaaccctattgttaatttccgaacttaaaaagtaatataacttaaattttctacattaatattttgaaaacccgttataaacattttccgtgtgt |
100 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15369485 |
ccacgaaaccctgttgttaatcttcgaacttaaaaagtaatataactcaaattaactacatttatattttgaaaacccgttataaacattttccgtgtgt |
15369386 |
T |
|
| Q |
101 |
aaaa--gaattgaagttgaaatttcacactctcatcactttaactaacaatgctccgagcaactgcatttccggcaccgaacaattccacggtgattctc |
198 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15369385 |
aaaaaagaattgaagttgaaatttcacactctcatcactttaactaacaatgctccgagcaactgcatttccggcaccgaacaattccacggtgattctc |
15369286 |
T |
|
| Q |
199 |
tctcgaaattacacgtgtacttat |
222 |
Q |
| |
|
||||||||| |||||||| ||||| |
|
|
| T |
15369285 |
tctcgaaatcacacgtgtccttat |
15369262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University