View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_low_76 (Length: 237)
Name: NF20071_low_76
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_76 |
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Alignment Details
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 37168470 - 37168368
Alignment:
| Q |
18 |
cctacactatgttttgagtaaaaaa--ttgtgagtggtataacatgctatctgtttgtataaattatttatccaacataattacgatatatttttatact |
115 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | || |||||||||||| |
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| T |
37168470 |
cctacactattttttgagtaaaaaaaattgtgagtggtataacatgctatttgtttgtataaattatttatccaacataattgcaatgtatttttatact |
37168371 |
T |
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| Q |
116 |
ttt |
118 |
Q |
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||| |
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| T |
37168370 |
ttt |
37168368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 43 - 143
Target Start/End: Complemental strand, 5868991 - 5868888
Alignment:
| Q |
43 |
ttgtgagtggtataacatgctatctgtttgtataaattatttatccaacataattacgatatatttttatacttttaaatataaa---ttgtgtgtatat |
139 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||| ||||||||||| ||| |||||||||||||||||||||||| ||||||||||| |
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| T |
5868991 |
ttgtgagtggtataacatgctatctgttaatatacattatttatgcaacataattatgatgtatttttatacttttaaatataaaatggtgtgtgtatat |
5868892 |
T |
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| Q |
140 |
atac |
143 |
Q |
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|||| |
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| T |
5868891 |
atac |
5868888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 40517320 - 40517421
Alignment:
| Q |
43 |
ttgtgagtggtataacatgctatctgtttgtataaattatttatccaacataattacgatatatttttatacttttaaatat-aaattgtgtgtatatat |
141 |
Q |
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||||| ||||||||||||| |||| ||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| |||||| ||||| |
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| T |
40517320 |
ttgtgcgtggtataacatgttatccgttaatataaattatttatccaacataattatgatgtatttttatacttttaaatataaaatggtgtgtgtatat |
40517419 |
T |
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| Q |
142 |
ac |
143 |
Q |
| |
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|| |
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|
| T |
40517420 |
ac |
40517421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 43 - 127
Target Start/End: Complemental strand, 31842225 - 31842141
Alignment:
| Q |
43 |
ttgtgagtggtataacatgctatctgtttgtataaattatttatccaacataattacgatatatttttatacttttaaatataaa |
127 |
Q |
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||||||||||||||||||||||| |||| ||||||||| || ||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
31842225 |
ttgtgagtggtataacatgctatttgttaatataaattacttgtccaacataattatgatgtatttttatacttttaaatataaa |
31842141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 35173990 - 35174095
Alignment:
| Q |
22 |
cactatgttttgagtaaaaaattgtgagtggtataacatgctatctgtttgtataaattatttatccaacataattacgatatatttttatacttttaaa |
121 |
Q |
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|||||||||||||| ||| || ||||||||| ||||||||| ||||| ||||||||||||||| || ||||||| ||| |||||||||||||||||| |
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| T |
35173990 |
cactatgttttgaggaaatttttctgagtggtagaacatgctacctgttaatataaattatttatctaatataattatgatgtatttttatacttttaaa |
35174089 |
T |
|
| Q |
122 |
tataaa |
127 |
Q |
| |
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|||||| |
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|
| T |
35174090 |
tataaa |
35174095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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