View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_low_79 (Length: 234)
Name: NF20071_low_79
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_79 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 10604682 - 10604902
Alignment:
| Q |
1 |
ttttttataattggtttttagacctaaatatctagtttaagttgtttcctannnnnnncttctcctagtaatatcaaatataaaagtagttaaggcattt |
100 |
Q |
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| T |
10604682 |
ttttttataattggtttttagacctaaatatctagtttaagttgtttcctatttttttcttctcctagtaatatcaaatataaaagtagttaaggcattt |
10604781 |
T |
|
| Q |
101 |
aaaaacaactatctgctcatgacatttcnnnnnnnggtcacaatattttttatttatgataatggaattagtcacattttgcataactatgttgataaat |
200 |
Q |
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| T |
10604782 |
aaaaacaactacctgctcatgacatttctttttttggtcacaatattttttatttatgataatggaattagtcacattttgcataactatgttgataaat |
10604881 |
T |
|
| Q |
201 |
ttgatatttcttgcacagaac |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
10604882 |
ttgatatttcttgcacagaac |
10604902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 59 - 215
Target Start/End: Complemental strand, 9674147 - 9673991
Alignment:
| Q |
59 |
cttctcctagtaatatcaaatataaaagtagttaaggcatttaaaaacaactatctgctcatgacatttcnnnnnnnggtcacaatattttttatttatg |
158 |
Q |
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||||| ||||||||||||||||| |||||| ||||| |||||||||||| || ||| || ||||||||| ||||||||||||||| || |||| |
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| T |
9674147 |
cttctgctagtaatatcaaatatgaaagtacttaagaaatttaaaaacaattacctgttcttgacatttctttttttggtcacaatatttttgatctatg |
9674048 |
T |
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| Q |
159 |
ataatggaattagtcacattttgcataactatgttgataaatttgatatttcttgca |
215 |
Q |
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|| |||| ||||||||||||| ||| ||||||||||||||||||||| ||||||||| |
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| T |
9674047 |
attatgggattagtcacatttcgcacaactatgttgataaatttgatgtttcttgca |
9673991 |
T |
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