View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_low_8 (Length: 570)
Name: NF20071_low_8
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Original strand, 5845072 - 5845626
Alignment:
| Q |
1 |
taaaagcctcaggcgaacgttcaattcctcggcgagtcataagccgaagaatccgccttgctccttgacacaacctggtcttgctaagtatatccaacat |
100 |
Q |
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| T |
5845072 |
taaaagcctcaggcgaacgttcaattcctcggcgagtcataagccgaagaatccgccttgctccttgacacaacctggtcttgctaagtatatccaacat |
5845171 |
T |
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| Q |
101 |
cgtatagtacacaatagcatcatgcctataccgccattgcctatcagcccagtnnnnnnn-tccaaagcaatcctttcatcatcctgagaccgcaaaaca |
199 |
Q |
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| T |
5845172 |
cgtatagtacacaatagcatcatgcctataccgccattgcctatcagcccagtaaaaaaaatccaaagcaatcctttcatcatcctgagaccgcaaaaca |
5845271 |
T |
|
| Q |
200 |
gcacaaacaagtcgaggattaagactccttaataaatgcctcaaattttcttcaaatttaggattccaatttgacctaagtgaaatcaacctacaaacct |
299 |
Q |
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| T |
5845272 |
gcacaaacaagtcgaggattaagactccttaataaatgcctcaaattttcttcaaatttaggattccaatttgacctaagtgaaatcaacctacaaacct |
5845371 |
T |
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| Q |
300 |
ccctaacaattgggtgtctaaattcactctcatcaatctcaaatcttgcaatattttctctctgtttgttactaccattcccatcaaaagaactaataaa |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5845372 |
ccctaacaattgggtgtctaaattcactctcatcaatctcaaatcttgcaatattttctctctgtttgttactaccattcccatcaaaagaactaataaa |
5845471 |
T |
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| Q |
400 |
ctcaaaactctcatcaatatcactactaccattttcttcagcttcatcttcttcatctaaatcatcatcaacacttgcaacaaaacgtgattcatcagaa |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5845472 |
ctcaaaactctcatcaatatcactactaccattttcttcaacttcatcttcttcatctaaatcatcatcaacacttgcaacaaaacgtgattcatcagaa |
5845571 |
T |
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| Q |
500 |
aacccatgacccattttcccaaaaccatcattgaaattctcagtattaaatttac |
554 |
Q |
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| T |
5845572 |
aacccatgacccattttcccaaaaccatcattgaaattctcagtattaaatttac |
5845626 |
T |
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