View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20071_low_83 (Length: 210)

Name: NF20071_low_83
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20071_low_83
NF20071_low_83
[»] chr3 (15 HSPs)
chr3 (11-194)||(9352808-9352991)
chr3 (16-194)||(9376993-9377171)
chr3 (10-136)||(9617488-9617614)
chr3 (25-135)||(9613993-9614103)
chr3 (11-163)||(9369579-9369731)
chr3 (38-135)||(9494861-9494958)
chr3 (11-194)||(9340578-9340761)
chr3 (11-136)||(9347952-9348077)
chr3 (38-131)||(41985598-41985691)
chr3 (11-123)||(9343823-9343935)
chr3 (20-135)||(9407332-9407447)
chr3 (38-135)||(9397751-9397848)
chr3 (11-120)||(9448295-9448404)
chr3 (46-132)||(9425542-9425628)
chr3 (11-120)||(9655383-9655492)
[»] chr2 (1 HSPs)
chr2 (41-136)||(20694357-20694452)
[»] chr1 (1 HSPs)
chr1 (46-135)||(4439826-4439915)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 9352991 - 9352808
Alignment:
Q  11 gagatgaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttccgcttctggttgggatctgtgtcttccca 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9352991 gagaagaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttctgcttctggttgggatctgtgtcttccca 9352892  T
Q  111 aaggaaattgtgtcatctttattgacacttccgtcctctctagtgacaatatggcaggcgggaaccgtgtttttcacttggatc 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9352891 aaggaaattgtgtcatctttattgacacttccgtcctctctagtgacaatatggcaggcgggaaccgtgtttttcacttggatc 9352808  T

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Target: chr3; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 9377171 - 9376993
Alignment:
Q  16 gaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttccgcttctggttgggatctgtgtcttcccaaagga 115  Q
    |||||||| ||||||||| |||||||||| |||| ||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||    
T  9377171 gaagtgggagaagttgaagaaattaggggataggattttgtttgtggggagtggatgttcgtttcctgcttctgcttgggatctgtgtcttcccaaagga 9377072  T
Q  116 aattgtgtcatctttattgacacttccgtcctctctagtgacaatatggcaggcgggaaccgtgtttttcacttggatc 194  Q
    |||||||||||||||||||||| |||||||||||||| | |||||||||||  |||||||| |||||||||||||||||    
T  9377071 aattgtgtcatctttattgacatttccgtcctctctacttacaatatggcacacgggaaccatgtttttcacttggatc 9376993  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 9617488 - 9617614
Alignment:
Q  10 agagatgaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttccgcttctggttgggatctgtgtcttccc 109  Q
    ||||| ||| ||||||||||||||||| ||||||| ||||||||||||  | | || ||||||||| ||||| ||||||| ||  ||| ||||| || ||    
T  9617488 agagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctgcttctgcttcagatttgtgtgtttcc 9617587  T
Q  110 aaaggaaattgtgtcatctttattgac 136  Q
    ||||| |||||||||||||||||||||    
T  9617588 aaagggaattgtgtcatctttattgac 9617614  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 135
Target Start/End: Original strand, 9613993 - 9614103
Alignment:
Q  25 gaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttccgcttctggttgggatctgtgtcttcccaaaggaaattgtgtc 124  Q
    ||||||||| || || |||| || |||||| ||  |||||||||||||||| ||||| ||||||| ||  |||||||||||| ||||||||||||||||     
T  9613993 gaagttgaagaattttggggatatggtttttttcttggggagtggatgttcattttctgcttctgcttcagatctgtgtcttaccaaaggaaattgtgtt 9614092  T
Q  125 atctttattga 135  Q
    |||||||||||    
T  9614093 atctttattga 9614103  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 11 - 163
Target Start/End: Complemental strand, 9369731 - 9369579
Alignment:
Q  11 gagatgaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttccgcttctggttgggatctgtgtcttccca 110  Q
    |||| |||||||||||||||||   | || |||| |||| |||| ||  | ||| |||||||||||||||| ||||||| ||  ||||| ||| |||| |    
T  9369731 gagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttcagatctatgtattccga 9369632  T
Q  111 aaggaaattgtgtcatctttattgacacttccgtcctctctagtgacaatatg 163  Q
    |||||||||||||| |||||||||||   |||||||||| || ||||||||||    
T  9369631 aaggaaattgtgtcgtctttattgacgaatccgtcctctgtattgacaatatg 9369579  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 9494861 - 9494958
Alignment:
Q  38 ttagggggtagggttttgtttgtggggagtggatgttcgttttccgcttctggttgggatctgtgtcttcccaaaggaaattgtgtcatctttattga 135  Q
    ||||||| ||||||||||||  |||||| ||||||||||||||| ||||||| ||  ||| ||||  || ||||||| ||||||||||||||||||||    
T  9494861 ttaggggatagggttttgttcttggggaatggatgttcgttttctgcttctgcttctgatttgtgcgtttccaaagggaattgtgtcatctttattga 9494958  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 9340761 - 9340578
Alignment:
Q  11 gagatgaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttccgcttctggttgggatctgtgtcttccca 110  Q
    |||| |||||||||||||||||  || || |||| ||||||||| ||  | ||| |||||||||||||||| ||||||| ||  ||||| ||| |||  |    
T  9340761 gagaagaagtgggtgaagttgaggaatttcggggatagggtttttttcattgggcgtggatgttcgttttctgcttctgcttcagatctatgtattcaaa 9340662  T
Q  111 aaggaaattgtgtcatctttattgacacttccgtcctctctagtgacaatatggcaggcgggaaccgtgtttttcacttggatc 194  Q
    ||||||||||||  ||||| ||||||   || ||||||  || | ||||||||| | | ||||| |||||||||||||| ||||    
T  9340661 aaggaaattgtgcaatcttcattgacgaatctgtcctccataataacaatatggtacgagggaagcgtgtttttcacttagatc 9340578  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 9348077 - 9347952
Alignment:
Q  11 gagatgaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttccgcttctggttgggatctgtgtcttccca 110  Q
    |||| |||||||||||||||||   | || |||| |||| |||| ||  | ||| |||||||||||||||| ||||||| ||  ||||| ||| |||| |    
T  9348077 gagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttcagatctatgtattccga 9347978  T
Q  111 aaggaaattgtgtcatctttattgac 136  Q
    |||||||||||||| |||||||||||    
T  9347977 aaggaaattgtgtcgtctttattgac 9347952  T

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Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 41985691 - 41985598
Alignment:
Q  38 ttagggggtagggttttgtttgtggggagtggatgttcgttttccgcttctggttgggatctgtgtcttcccaaaggaaattgtgtcatcttta 131  Q
    ||||||| ||| ||||||||  |||||| ||||||||||||||| ||||||| || |||| ||| | ||  |||||||||||||||||||||||    
T  41985691 ttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatcttta 41985598  T

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Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 9343935 - 9343823
Alignment:
Q  11 gagatgaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttccgcttctggttgggatctgtgtcttccca 110  Q
    |||| ||||||||||||||| | ||  ||||||| ||| ||||||||  |||||| || |||||||||||| ||||||| || |||| ||||| |||| |    
T  9343935 gagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggatttgtgtgttccta 9343836  T
Q  111 aaggaaattgtgt 123  Q
     ||||||||||||    
T  9343835 gaggaaattgtgt 9343823  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 9407447 - 9407332
Alignment:
Q  20 tgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttccgcttctggttgggatctgtgtcttcccaaaggaaatt 119  Q
    |||||||||||||  |  ||||||| ||||||||||||  | | || ||||||||| ||||| ||||| | || |||| ||||| || ||||||| ||||    
T  9407447 tgggtgaagttgatgagtttaggggatagggttttgttctttgtgaatggatgttcattttctgcttcagcttcggatttgtgtgttgccaaagggaatt 9407348  T
Q  120 gtgtcatctttattga 135  Q
    ||||| ||||||||||    
T  9407347 gtgtcttctttattga 9407332  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 9397848 - 9397751
Alignment:
Q  38 ttagggggtagggttttgtttgtggggagtggatgttcgttttccgcttctggttgggatctgtgtcttcccaaaggaaattgtgtcatctttattga 135  Q
    ||||||| |||||| |||||  | | || ||||||||| ||||||||||| | || |||| ||||| || ||||||| ||||||||| ||||||||||    
T  9397848 ttaggggatagggtcttgttctttgtgaatggatgttcattttccgcttcagctttggatttgtgtgttgccaaagggaattgtgtcgtctttattga 9397751  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 9448404 - 9448295
Alignment:
Q  11 gagatgaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttccgcttctggttgggatctgtgtcttccca 110  Q
    |||| ||| ||||||||||| | ||  ||||||| ||| ||||||||  |||||| ||  ||||||||||| ||||||| || |||| |||||||||| |    
T  9448404 gagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgttttctgcttctgcttcggatttgtgtcttccta 9448305  T
Q  111 aaggaaattg 120  Q
     |||||||||    
T  9448304 gaggaaattg 9448295  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 9425628 - 9425542
Alignment:
Q  46 tagggttttgtttgtggggagtggatgttcgttttccgcttctggttgggatctgtgtcttcccaaaggaaattgtgtcatctttat 132  Q
    ||||||||||||  | | || ||||||||| ||||| ||||| | || |||| ||||| || ||||||| |||||||||||||||||    
T  9425628 tagggttttgttctttgtgaatggatgttcattttctgcttcagcttcggatttgtgtgttgccaaagggaattgtgtcatctttat 9425542  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 9655383 - 9655492
Alignment:
Q  11 gagatgaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttccgcttctggttgggatctgtgtcttccca 110  Q
    |||| ||| |||||||||||||  || ||||||| ||||||||||||| ||||    |||||||||||||| || || | || |||| ||||| || |||    
T  9655383 gagaagaaatgggtgaagttgatgaatttaggggatagggttttgtttttgggcgaaggatgttcgttttctgcatcagcttcggatttgtgtgtttcca 9655482  T
Q  111 aaggaaattg 120  Q
    |||| |||||    
T  9655483 aagggaattg 9655492  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 41 - 136
Target Start/End: Original strand, 20694357 - 20694452
Alignment:
Q  41 gggggtagggttttgtttgtggggagtggatgttcgttttccgcttctggttgggatctgtgtcttcccaaaggaaattgtgtcatctttattgac 136  Q
    |||| ||||||||||||| |||||| ||||||||||||||| ||||||| || |||| ||||| || ||||||| |||||||||||||||||||||    
T  20694357 ggggatagggttttgtttttggggaatggatgttcgttttctgcttctgcttcggatttgtgtgttgccaaagggaattgtgtcatctttattgac 20694452  T

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Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 46 - 135
Target Start/End: Complemental strand, 4439915 - 4439826
Alignment:
Q  46 tagggttttgtttgtggggagtggatgttcgttttccgcttctggttgggatctgtgtcttcccaaaggaaattgtgtcatctttattga 135  Q
    ||||||||||||| |||||| ||||||||||||||| ||||||| || |||| ||||| || | ||||| ||||||||||||||||||||    
T  4439915 tagggttttgtttttggggaatggatgttcgttttctgcttctgcttcggatttgtgtgtttctaaagggaattgtgtcatctttattga 4439826  T

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