View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20071_low_9 (Length: 517)
Name: NF20071_low_9
Description: NF20071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20071_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 45744834 - 45745174
Alignment:
| Q |
1 |
ccaggtcatattggtctcgtacacggtaaaaaacaaatattttatactaaaggagacaggaatagaagcatcaactgtattgtttatacagcaaagattg |
100 |
Q |
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| T |
45744834 |
ccaggtcatattggtctcgtacacggtaaaaaacaaatattttatactaaaggagacaggaatagaagcatcaactgtattgtttatacagcaaagattg |
45744933 |
T |
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| Q |
101 |
aaaaatccaagatttaaaatttccatgcagttttaaatactaaaagatgccaaacagatatatgaagtttcaaagctaaacaatataagccttgattcac |
200 |
Q |
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| T |
45744934 |
aaaaatccaagatttaaaatttccatgcagttttaaatactaaaagatgccaaacagatatatgaagtttcaaagctaaacaatataagccttgattcac |
45745033 |
T |
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| Q |
201 |
taatctctaggagtactagaagtggacaatctaagtacagacaataagcatcttcccaactaaacaagtnnnnnnnctaccaaaaaactgatttctcggg |
300 |
Q |
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| T |
45745034 |
taatctctaggagtactagaagtggacaatctaagtacagacaataagcatcttcccaactaaacaagtaaaaaaactaccaaaaaactgatttctcggg |
45745133 |
T |
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| Q |
301 |
caaatgtcaaccttattctatttagatagagcagtcactat |
341 |
Q |
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| T |
45745134 |
caaatttcaaccttattctatttagatagagcagtcactat |
45745174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 403 - 496
Target Start/End: Original strand, 45745237 - 45745330
Alignment:
| Q |
403 |
cttggattagcacttaccttggagtaaccatttggcatatcctgcacaatacagccagaaggaagtcttctacagcttatgaatggttgtgcat |
496 |
Q |
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| T |
45745237 |
cttggattagcacttaccttggagtaaccatttggcatatcctgcacaatacagccagaaggaagtcttctgcagcttatgaatggttgtgcat |
45745330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 416 - 467
Target Start/End: Original strand, 12325507 - 12325558
Alignment:
| Q |
416 |
ttaccttggagtaaccatttggcatatcctgcacaatacagccagaaggaag |
467 |
Q |
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| T |
12325507 |
ttaccttggagtaaccatttggcatatcttgcacaacacaaccagagggaag |
12325558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 477
Target Start/End: Original strand, 28597362 - 28597423
Alignment:
| Q |
416 |
ttaccttggagtaaccatttggcatatcctgcacaatacagccagaaggaagtcttctacag |
477 |
Q |
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| T |
28597362 |
ttaccttagagtaaccatttggcatatcttgaaccacacaaccagaaggaagcctcctacag |
28597423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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