View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20072_high_1 (Length: 966)
Name: NF20072_high_1
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20072_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 523 - 953
Target Start/End: Complemental strand, 38823030 - 38822597
Alignment:
| Q |
523 |
tcaggtttgattttcttttcgaatggcagttgaggtgggattaatgcataccttcaaagcaatgtactcccaatcttgtagtaagagtaaacattaacag |
622 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38823030 |
tcaggtttgattttcttttcgaatggcggttgtggtgggattaatgcataccttccaagcaatgtactcccaatcttgtagtaagagtaaacattaacag |
38822931 |
T |
|
| Q |
623 |
tagcaagtttaagaagttctatgctaagggatttactaccccaattaaagtccaggcttaaaggtctctgctcccttaaatcaatcccattcacaacaaa |
722 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||| |
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| T |
38822930 |
tagcaagtttaagaagttatatgctaagggatttactaccccaattaaagtccaggctcagaggtctgtgctcccttaaatcaatcccattcacaacaaa |
38822831 |
T |
|
| Q |
723 |
agctaattcatcaagaccacaaaaactcaagcgaggcatatccataacagtagcagcaagtggtccaagttcaaatgcat---ttatgtatccaatccca |
819 |
Q |
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| T |
38822830 |
agctaattcatcaagaccacaaaaactcaagcgaggcatatccataacagtagcagcaagtggtccaagttcaaatgcatttattatgtatccaatccca |
38822731 |
T |
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| Q |
820 |
cactgcttctctaacttaaccaatttatctttgataccaacgcctacaaaggtataatctggcatagagagaaaattatgcatcaatggaagaggtaaaa |
919 |
Q |
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| T |
38822730 |
cactgcttctctaacttaaccaatttatctttgataccaacgcctacaaaggtataatctggcatagagagaaaattatgcatcaatggaagaggtaaaa |
38822631 |
T |
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| Q |
920 |
atctatgaaaataattaccacttagcagaataat |
953 |
Q |
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| T |
38822630 |
atctatgaaaacaattaccaattagcagaataat |
38822597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 386 - 517
Target Start/End: Complemental strand, 38823203 - 38823074
Alignment:
| Q |
386 |
atattcaagtctaataacgagtaaaaactcaagcgacaaaagcacaataataacattaaaatatctattttagaaaaatttaataaacttaggcacatta |
485 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38823203 |
atattcaagtctaataacgagtaaa--ctcaagcgacaaaattacaataataacattaaaatatctattttagaaaaatttaataaacttaggcacatta |
38823106 |
T |
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| Q |
486 |
aggcaagtcttccttagctcattataatataa |
517 |
Q |
| |
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| T |
38823105 |
aagcaagtcttccttagctcattataatataa |
38823074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 320 - 386
Target Start/End: Complemental strand, 38823704 - 38823638
Alignment:
| Q |
320 |
catgcagctcataaaaactggaaaatgtaaatttggtgctgcagacaaattctatcactagaaaaga |
386 |
Q |
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| T |
38823704 |
catgcagctcataaaaattggaaaatgtaaatttggtgctggagacaaattctatcactagaaaaga |
38823638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 718 - 869
Target Start/End: Complemental strand, 38814293 - 38814142
Alignment:
| Q |
718 |
acaaaagctaattcatcaagaccacaaaaactcaagcgaggcatatccataacagtagcagcaagtggtccaagttcaaatgcatttatgtatccaatcc |
817 |
Q |
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| T |
38814293 |
acaaaagctaattcatcaacaccacaaaaactcaaatgaggcctcttcataacacttgcagcaaagggtccaagttcaacagcatttctacatccaaatc |
38814194 |
T |
|
| Q |
818 |
cacactgcttctctaacttaaccaatttatctttgataccaacgcctacaaa |
869 |
Q |
| |
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|| |||||||||| |||||| |||| || |||||||| ||||| || ||||| |
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| T |
38814193 |
catactgcttctccaacttagccaaattctctttgattccaactccaacaaa |
38814142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 579 - 633
Target Start/End: Complemental strand, 38831456 - 38831402
Alignment:
| Q |
579 |
aagcaatgtactcccaatcttgtagtaagagtaaacattaacagtagcaagttta |
633 |
Q |
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| T |
38831456 |
aagcaatgtgctcccgatcatgtagtaagagtaaacattaatagtagcaagttta |
38831402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 579 - 632
Target Start/End: Complemental strand, 38814426 - 38814373
Alignment:
| Q |
579 |
aagcaatgtactcccaatcttgtagtaagagtaaacattaacagtagcaagttt |
632 |
Q |
| |
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||||||| | |||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
38814426 |
aagcaatttgctcccaatcttgtaataagaataaacattaacagtagcaagttt |
38814373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 599 - 650
Target Start/End: Complemental strand, 38818812 - 38818761
Alignment:
| Q |
599 |
tgtagtaagagtaaacattaacagtagcaagtttaagaagttctatgctaag |
650 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
38818812 |
tgtaataagagtaaacattaacagtagcaagtttagcaagttctttgctaag |
38818761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 773 - 883
Target Start/End: Complemental strand, 38831259 - 38831149
Alignment:
| Q |
773 |
tagcagcaagtggtccaagttcaaatgcatttatgtatccaatcccacactgcttctctaacttaaccaatttatctttgataccaacgcctacaaaggt |
872 |
Q |
| |
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|||||||||| ||||||||||| | |||||| || ||| ||||||| | | ||||| | |||| |||| | |||||| |||||||| | |||||||| |
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| T |
38831259 |
tagcagcaagaggtccaagttccacagcatttctgcatctaatcccatattccttcttaagcttagccaaatcatctttaataccaacactgacaaaggt |
38831160 |
T |
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| Q |
873 |
ataatctggca |
883 |
Q |
| |
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||||||||||| |
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| T |
38831159 |
ataatctggca |
38831149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 570 - 642
Target Start/End: Original strand, 17198081 - 17198153
Alignment:
| Q |
570 |
ataccttcaaagcaatgtactcccaatcttgtagtaagagtaaacattaacagtagcaagtttaagaagttct |
642 |
Q |
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|||||||| ||||||| ||||||||||||| | |||||||||||||||||||||||||||||| ||||||| |
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| T |
17198081 |
ataccttccaagcaatttactcccaatcttatgataagagtaaacattaacagtagcaagtttagcaagttct |
17198153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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