View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20072_high_12 (Length: 478)
Name: NF20072_high_12
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20072_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 307
Target Start/End: Complemental strand, 27644447 - 27644128
Alignment:
| Q |
6 |
gacgaggacgccgatgaaaagattgaagataaagttgaggataaaaaagatgttgaggaggatcaaattgaatagaatagttattatga----------- |
94 |
Q |
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| T |
27644447 |
gacgaggacgccgatgaaaagattgaagataaagttgagaataaaaaagatgttgaggaggatcaaattgaatagaatagttattatgatatgtttttct |
27644348 |
T |
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| Q |
95 |
-----aacagaattagggttttgt--ccccattgttgaaattatgaattgaaattacaaatgttacctttgccctaataatacaatttgagtttgttttt |
187 |
Q |
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| T |
27644347 |
tatgaaacataattagggttttttttccccaatgttgaaatcatgaattgaaattacaaatgttacctttgccctaataatacaatttgagtttgtttgt |
27644248 |
T |
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| Q |
188 |
ggttttagtgcgttggtggttcttgtttattcataatacttttacaaatcaacactaattttcttgattttggattcttatatgtcaacaatgcgtcatt |
287 |
Q |
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| T |
27644247 |
ggttttagtgcgttggtggttcttgtttattcataatacttttacaaatcaacactaattttcttgattttggattcttatatgtcaacaatgcgtcatt |
27644148 |
T |
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| Q |
288 |
gttgaactattcctttgatt |
307 |
Q |
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| T |
27644147 |
gttgaactattcctttgatt |
27644128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 89 - 228
Target Start/End: Complemental strand, 27548868 - 27548728
Alignment:
| Q |
89 |
ttatgaaacagaattagggttttgt-ccccattgttgaaattatgaattgaaattacaaatgttacctttgccctaataatacaatttgagtttgttttt |
187 |
Q |
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| T |
27548868 |
ttatgaaacagaattatggtttttttccccaatgttgaaattatgaattgaaattacaaatgttacctttgccctaataatacaatttgggtttgttttt |
27548769 |
T |
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| Q |
188 |
ggttttagtgcgttggtggttcttgtttattcataatactt |
228 |
Q |
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| T |
27548768 |
agttttagtgcgttggtggttcttgtttattcataatactt |
27548728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 377 - 461
Target Start/End: Complemental strand, 27644130 - 27644046
Alignment:
| Q |
377 |
attgcggtcacggatgtgattgcgctcattacagtttaatagtgtgaagatttgaaccaaaatggctgaaatcctctgatgtggt |
461 |
Q |
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| T |
27644130 |
attgcggtcacagatgtgattgtgctcattacagtttaatagtgtgaagatttgaaccaaaatggctgaaatcctctgatgtggt |
27644046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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