View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20072_high_15 (Length: 444)
Name: NF20072_high_15
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20072_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 425
Target Start/End: Complemental strand, 23747054 - 23746646
Alignment:
| Q |
18 |
tttaacccttttgcatcagctgtctgaaattggttgattgacttgctacttttgatgtgcactataaaggagtagatcagtcatattgtttctaggtttt |
117 |
Q |
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| T |
23747054 |
tttaacccttttgcatctgctgtctgaaattggtttattgacttggtacttttgttgtgcactataaaggagtagatcagtcatattgtttctaggtttt |
23746955 |
T |
|
| Q |
118 |
ttctttctttatttcatattgatattccaaacagactattaagatgataaaaggaa-cattggaggtgaattatacctctttctggtacattgttaggat |
216 |
Q |
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| T |
23746954 |
ttctttctttatttcatattgagattccaaacagactattaagatgataaaaggaaacattggaggtgaattatacctctttctggtacattgttaggat |
23746855 |
T |
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| Q |
217 |
atataaggagacgttagctagggacaattggcatggttagttgattagttagaggtaattagcttacataataaataggacacaagtagagatggagagc |
316 |
Q |
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| T |
23746854 |
atataaggagacgttagttagggacaattggcatggttagttgattagttagaggtaattagcttacataatgaataggacacaagtagagatggagagc |
23746755 |
T |
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| Q |
317 |
attttttaaagtgacactaacagtcattttacttccgccttcatggaaatttgaaccaagtccctcgagtttacgagacccttggacagaagggaaaccc |
416 |
Q |
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| T |
23746754 |
attttttaaagcgacactaacagtcattttacttctgccttcatggaaatttgaactaagtccctcgagtttacgagacccttggacagaagggaaaccc |
23746655 |
T |
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| Q |
417 |
ttggacaaa |
425 |
Q |
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| T |
23746654 |
ttagacaaa |
23746646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 23662585 - 23662522
Alignment:
| Q |
127 |
tatttcatattgatattccaaacagactattaagatgataaaaggaacattggaggtgaattata |
191 |
Q |
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| T |
23662585 |
tatttcatatcgagattccaaagacattattaagatgataaaaagaacattgg-ggtgaattata |
23662522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 296
Target Start/End: Original strand, 23720473 - 23720545
Alignment:
| Q |
224 |
gagacgttagctagggacaattggcatggttagttgattagttagaggtaattagcttacataataaatagga |
296 |
Q |
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| T |
23720473 |
gagacgttagttagtgacatttagggtggttagttgatttgttagaggtagttagattatataataaatagga |
23720545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 303
Target Start/End: Original strand, 705049 - 705100
Alignment:
| Q |
252 |
gttagttgattagttagaggtaattagcttacataataaataggacacaagt |
303 |
Q |
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| T |
705049 |
gttagttgattagttacagataattagcttacataataagtaggacataagt |
705100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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