View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20072_high_17 (Length: 411)

Name: NF20072_high_17
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20072_high_17
NF20072_high_17
[»] chr3 (6 HSPs)
chr3 (213-407)||(6931327-6931520)
chr3 (19-145)||(6931163-6931289)
chr3 (342-411)||(6486821-6486890)
chr3 (20-54)||(30172069-30172103)
chr3 (20-53)||(28725737-28725770)
chr3 (18-54)||(4304141-4304177)
[»] chr5 (2 HSPs)
chr5 (18-53)||(29673290-29673325)
chr5 (20-52)||(2846573-2846605)
[»] chr7 (5 HSPs)
chr7 (18-52)||(12821179-12821213)
chr7 (18-51)||(20164620-20164653)
chr7 (18-54)||(3555363-3555399)
chr7 (18-54)||(19105476-19105512)
chr7 (20-52)||(29635235-29635267)
[»] chr1 (3 HSPs)
chr1 (19-52)||(30746773-30746806)
chr1 (19-52)||(30768224-30768257)
chr1 (18-54)||(14760095-14760131)
[»] chr8 (3 HSPs)
chr8 (18-57)||(6906259-6906298)
chr8 (18-54)||(15229614-15229650)
chr8 (20-52)||(31212313-31212345)
[»] chr6 (2 HSPs)
chr6 (18-50)||(13340445-13340477)
chr6 (18-54)||(31298946-31298982)
[»] chr4 (1 HSPs)
chr4 (18-50)||(53343707-53343739)
[»] chr2 (3 HSPs)
chr2 (18-50)||(16127920-16127952)
chr2 (18-54)||(18509495-18509531)
chr2 (18-54)||(43130364-43130400)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 213 - 407
Target Start/End: Original strand, 6931327 - 6931520
Alignment:
Q  213 ttttagtagcattttaactgttaagtctgtaaaattaaatttagatttaatcagatatagaaagttgctgcatatataagcaaatggtaacacataacgt 312  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6931327 ttttagtagcattttaactgt-aagtctgtaaaattaaatttatatttaatcagatatagaaagttgctacatatataagcaaatggtaacacataacgt 6931425  T
Q  313 gaacaatttacaaagatatgatgaaccaattataattagctttttcttgaacagcaagctattgcaagaaaattggaagcagtgatattgcaata 407  Q
    |||||||||||||||| ||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6931426 gaacaatttacaaagaaatgatgaattaattataattagcttttccttgaacagcaagctattgcaagaaaattggaaacagtgatattgcaata 6931520  T

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Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 6931163 - 6931289
Alignment:
Q  19 gtatatttaaggggaccatttacttatttaaccctacaaataataactcctaatgactaatctatatctccaatattagtgattgggagctggactccaa 118  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6931163 gtatatttaagaggactatttacttatttaaccctacaaataataactcctaatgactaatctatatcttcaatattagtgattgggagctggactccaa 6931262  T
Q  119 tgccttgaagttcaccaactgtaacaa 145  Q
    |||||||||||||||||||||||||||    
T  6931263 tgccttgaagttcaccaactgtaacaa 6931289  T

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Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 342 - 411
Target Start/End: Complemental strand, 6486890 - 6486821
Alignment:
Q  342 ttataattagctttttcttgaacagcaagctattgcaagaaaattggaagcagtgatattgcaataagac 411  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6486890 ttataattagcttttccttgaacagcaagctattgcaagaaaattggaagcagtgatattgcaataagac 6486821  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 30172103 - 30172069
Alignment:
Q  20 tatatttaaggggaccatttacttatttaacccta 54  Q
    |||||||| ||||||||||||||||||||||||||    
T  30172103 tatatttagggggaccatttacttatttaacccta 30172069  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 28725737 - 28725770
Alignment:
Q  20 tatatttaaggggaccatttacttatttaaccct 53  Q
    |||||||| |||||||||||||||||||||||||    
T  28725737 tatatttagggggaccatttacttatttaaccct 28725770  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 4304177 - 4304141
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaacccta 54  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  4304177 ggtatatttaaggggacgatttatttatttaacccta 4304141  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 29673325 - 29673290
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaaccct 53  Q
    ||||||||||||||||||||||||||||||||||||    
T  29673325 ggtatatttaaggggaccatttacttatttaaccct 29673290  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 2846605 - 2846573
Alignment:
Q  20 tatatttaaggggaccatttacttatttaaccc 52  Q
    |||||||| ||||||||||||||||||||||||    
T  2846605 tatatttagggggaccatttacttatttaaccc 2846573  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 12821213 - 12821179
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaaccc 52  Q
    |||||||||||||||||||||||||||||||||||    
T  12821213 ggtatatttaaggggaccatttacttatttaaccc 12821179  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 20164653 - 20164620
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaacc 51  Q
    ||||||||| ||||||||||||||||||||||||    
T  20164653 ggtatattttaggggaccatttacttatttaacc 20164620  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 3555399 - 3555363
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaacccta 54  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  3555399 ggtatatttagggggaccatttgcttatttaacccta 3555363  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 19105476 - 19105512
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaacccta 54  Q
    |||||||||| |||||| |||||||||||||||||||    
T  19105476 ggtatatttagggggactatttacttatttaacccta 19105512  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 29635267 - 29635235
Alignment:
Q  20 tatatttaaggggaccatttacttatttaaccc 52  Q
    |||||||| ||||||||||||||||||||||||    
T  29635267 tatatttagggggaccatttacttatttaaccc 29635235  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 30746806 - 30746773
Alignment:
Q  19 gtatatttaaggggaccatttacttatttaaccc 52  Q
    ||||||||||||||||||||||||||||||||||    
T  30746806 gtatatttaaggggaccatttacttatttaaccc 30746773  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 30768257 - 30768224
Alignment:
Q  19 gtatatttaaggggaccatttacttatttaaccc 52  Q
    ||||||||||||||||||||||||||||||||||    
T  30768257 gtatatttaaggggaccatttacttatttaaccc 30768224  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 14760095 - 14760131
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaacccta 54  Q
    |||||||||||||||| ||||||||||||||||||||    
T  14760095 ggtatatttaaggggatcatttacttatttaacccta 14760131  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 6906298 - 6906259
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaaccctacaa 57  Q
    |||||||||| |||||| ||||||||||||||||||||||    
T  6906298 ggtatatttagggggactatttacttatttaaccctacaa 6906259  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 15229650 - 15229614
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaacccta 54  Q
    |||||||||||||| || |||||||||||||||||||    
T  15229650 ggtatatttaagggaactatttacttatttaacccta 15229614  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 31212345 - 31212313
Alignment:
Q  20 tatatttaaggggaccatttacttatttaaccc 52  Q
    ||||||||||||||| |||||||||||||||||    
T  31212345 tatatttaaggggactatttacttatttaaccc 31212313  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 13340477 - 13340445
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaac 50  Q
    ||||||||||||||||| |||||||||||||||    
T  13340477 ggtatatttaaggggactatttacttatttaac 13340445  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 31298946 - 31298982
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaacccta 54  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  31298946 ggtatatttaaagggactatttacttatttaacccta 31298982  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 53343739 - 53343707
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaac 50  Q
    |||||||||||| ||||||||||||||||||||    
T  53343739 ggtatatttaagaggaccatttacttatttaac 53343707  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 16127952 - 16127920
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaac 50  Q
    ||||||||||||||||| |||||||||||||||    
T  16127952 ggtatatttaaggggactatttacttatttaac 16127920  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 18509531 - 18509495
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaacccta 54  Q
    |||||||||| |||||||||||| |||||||||||||    
T  18509531 ggtatatttagggggaccatttaattatttaacccta 18509495  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 43130364 - 43130400
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaacccta 54  Q
    |||||||||| || |||||||||||||||||||||||    
T  43130364 ggtatatttagggagaccatttacttatttaacccta 43130400  T

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