View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20072_high_20 (Length: 386)
Name: NF20072_high_20
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20072_high_20 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 296 - 386
Target Start/End: Complemental strand, 40618071 - 40617981
Alignment:
| Q |
296 |
taaaataattcataatttatctttcccatctaaaactaagtatatttctcttgtatgacatgccaaaaatatattatagtttagaatgaat |
386 |
Q |
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| T |
40618071 |
taaaacaattcataatttatctttcccatctaaaattaagtatatttctcttgtatgacatgccaaaaatatcttatagtttagaatgaat |
40617981 |
T |
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Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 40618358 - 40618155
Alignment:
| Q |
9 |
agaagcaaaggagaaaagcgcaactaatatttgaaccttaaaattggatgaagtgcaaggaatactcggctcaaccaaaaaataagattacctnnnnnnn |
108 |
Q |
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| T |
40618358 |
agaaacaaaggagaaaagcacaactaatatttgaaccttaaaattggaagaagtgcaagg--------gctcaaccaaaaaacaagattacctaaaaaaa |
40618267 |
T |
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| Q |
109 |
nnnn---------ctgagtggataatgataatacttctctgtctcgaattgtactcactttacataagaatattgtctcaaactataaatgattttaaaa |
199 |
Q |
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| T |
40618266 |
aaaaaaaaaaaaaccgagtggataatgtcaatactcctctgtcccgaattgtactcactttacataaaaatattgtctcaaactatagatgattttaaaa |
40618167 |
T |
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| Q |
200 |
tatcaacgaacc |
211 |
Q |
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| T |
40618166 |
tatcaacgaacc |
40618155 |
T |
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