View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20072_high_21 (Length: 362)

Name: NF20072_high_21
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20072_high_21
NF20072_high_21
[»] chr3 (2 HSPs)
chr3 (37-297)||(12700551-12700825)
chr3 (22-85)||(47615259-47615322)
[»] chr5 (2 HSPs)
chr5 (37-297)||(19753288-19753562)
chr5 (22-85)||(18486586-18486649)
[»] chr8 (3 HSPs)
chr8 (152-297)||(23169479-23169624)
chr8 (22-116)||(23169626-23169720)
chr8 (37-85)||(10007451-10007499)
[»] chr7 (2 HSPs)
chr7 (22-85)||(7500805-7500868)
chr7 (218-296)||(41740512-41740590)
[»] chr6 (1 HSPs)
chr6 (23-85)||(7315987-7316049)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 37 - 297
Target Start/End: Original strand, 12700551 - 12700825
Alignment:
Q  37 ttcttcttcttcctcttgaacccatcaccttcccaacaaaacccccaagtactccatagtagctacatgtctacaaccccatatggatctgagaggagct 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12700551 ttcttcttcttcctcttgaacccatcaccttcccaacaaaacccccaagtactccatagtagctacaagtctacaaccccatatggatctgagaggagct 12700650  T
Q  137 tcttccatattaaatatataggcgtgttcttgtgcgtggctaaggcgtgtt--------------tgaggctttgtggttctgtagccgcagagttgata 222  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||              ||||||||||||||||||| |||||||||||||||    
T  12700651 tcttccatattaaatatataggcgtgttcttgtgcgtagctaaggcgtgtttgaggcttgaggtatgaggctttgtggttctgtggccgcagagttgata 12700750  T
Q  223 cggttggggggagttttttggcctaacattatgcctgttgttgctggttctgttttgctctctaggctttctagc 297  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12700751 tggttggggggagttttttggcctaacattatgcctgttgttgctggttctgttttgctctctaggctttctagc 12700825  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 47615322 - 47615259
Alignment:
Q  22 ttccattccaatgatttcttcttcttcctcttgaacccatcaccttcccaacaaaacccccaag 85  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47615322 ttccattccaatggtttcttcttcttcctcttgaacccatcaccttcccaacaaaacccccaag 47615259  T

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Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 37 - 297
Target Start/End: Original strand, 19753288 - 19753562
Alignment:
Q  37 ttcttcttcttcctcttgaacccatcaccttcccaacaaaacccc-caagtactccatagtagctacatgtctacaaccccatatggatctgagaggagc 135  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19753288 ttcttcttcttcctcttgaacc-atcaccttcccaacaaaaccccccaagtactccatagtagctacaagtctacaaccccatatggatctgagaggagc 19753386  T
Q  136 ttcttccatattaaatatataggcgtgttcttgtgcgtggctaaggcgtgtt--------------tgaggctttgtggttctgtagccgcagagttgat 221  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||              ||||||||||||||||||| ||||||||||||||    
T  19753387 ttcttccatattaaatatataggcgtgttcttgtgcgtcgctaaggcgtgtttgaggcttgaggtatgaggctttgtggttctgtggccgcagagttgat 19753486  T
Q  222 acggttggggggagttttttggcctaacattatgcctgttgttgctggttctgttttgctctctaggctttctagc 297  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||    
T  19753487 acggttggggggagttttttggcctaacactatgcctgttgttgctggttctgttttgctctttagactttctagc 19753562  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 18486649 - 18486586
Alignment:
Q  22 ttccattccaatgatttcttcttcttcctcttgaacccatcaccttcccaacaaaacccccaag 85  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18486649 ttccattccaatggtttcttcttcttcctcttgaacccatcaccttcccaacaaaacccccaag 18486586  T

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Target: chr8 (Bit Score: 114; Significance: 9e-58; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 152 - 297
Target Start/End: Complemental strand, 23169624 - 23169479
Alignment:
Q  152 atataggcgtgttcttgtgcgtggctaaggcgtgtttgaggctttgtggttctgtagccgcagagttgatacggttggggggagttttttggcctaacat 251  Q
    |||||||||||| |||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||| |     
T  23169624 atataggcgtgtacttgagcgtggctaaggcgtgtttgaggcttcgtggttctgtggccgcagagttgatacggttggagggagttttttggcctaatac 23169525  T
Q  252 tatgcctgttgttgctggttctgttttgctctctaggctttctagc 297  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  23169524 tatgcctgttgttgctggttctgttttgctctctaggcattctagc 23169479  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 23169720 - 23169626
Alignment:
Q  22 ttccattccaatgatttcttcttcttcctcttgaacccatcaccttcccaacaaaacccccaagtactccatagtagctacatgtctacaacccc 116  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  23169720 ttccattccaatggcttcttcttcttcctcttgaacccatcaccttcccaacaaaaccctcaagtactccatagtagctacaagtctacaacccc 23169626  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 10007499 - 10007451
Alignment:
Q  37 ttcttcttcttcctcttgaacccatcaccttcccaacaaaacccccaag 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10007499 ttcttcttcttcctcttgaacccatcaccttcccaacaaaacccccaag 10007451  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 7500805 - 7500868
Alignment:
Q  22 ttccattccaatgatttcttcttcttcctcttgaacccatcaccttcccaacaaaacccccaag 85  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7500805 ttccattccaatggtttcttcttcttcctcttgaacccatcaccttcccaacaaaacccccaag 7500868  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 296
Target Start/End: Original strand, 41740512 - 41740590
Alignment:
Q  218 tgatacggttggggggagttttttggcctaacattatgcctgttgttgctggttctgttttgctctctaggctttctag 296  Q
    ||||||||||| |||   |||||||||||||||   ||||| |||||||||||||| ||||| | ||||||| ||||||    
T  41740512 tgatacggttgcgggattttttttggcctaacaggttgcctattgttgctggttctattttgatttctaggcattctag 41740590  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 7316049 - 7315987
Alignment:
Q  23 tccattccaatgatttcttcttcttcctcttgaacccatcaccttcccaacaaaacccccaag 85  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7316049 tccattccaatggcttcttcttcttcctcttgaacccatcaccttcccaaaaaaacccccaag 7315987  T

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