View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20072_high_25 (Length: 340)

Name: NF20072_high_25
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20072_high_25
NF20072_high_25
[»] chr4 (2 HSPs)
chr4 (22-314)||(17438825-17439119)
chr4 (37-93)||(11168124-11168180)
[»] chr1 (1 HSPs)
chr1 (13-108)||(41027287-41027382)
[»] chr6 (1 HSPs)
chr6 (13-108)||(557227-557322)
[»] chr7 (1 HSPs)
chr7 (38-90)||(33397626-33397678)
[»] chr8 (2 HSPs)
chr8 (14-99)||(43108025-43108110)
chr8 (36-106)||(36322802-36322872)
[»] chr5 (1 HSPs)
chr5 (24-100)||(42229039-42229115)


Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 22 - 314
Target Start/End: Original strand, 17438825 - 17439119
Alignment:
Q  22 actcaatatttcctctaaattatgctccaccacctcccttgatttatggccagaaagaaatttgattggacaattgattatcgctagccagccattccgg 121  Q
    |||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17438825 actcaatatttcctttaaattatgccccaccacctcccttgatttgtggccagaaagaaatttaattggacaattgattatcgctagccagccattccgg 17438924  T
Q  122 acaat--ctctctggagaagttaaatagcattgcttgagaggaaattagggttaaaagaatcgaaatggatcaaattttacaatgcttatatagaccaaa 219  Q
    |||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17438925 acaatttctctctggagaaattaaatagcattgcttgagaggaaattagggttaaaagaatcgaaatagatcaaattttacaatgcttatatagaccaaa 17439024  T
Q  220 ataagacaaccatactgtaacataatcaatattgctctctatcataatgcagaatagattactatatatcaaattgtgtcttctattcttctaga 314  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  17439025 ataagacaaccatactgtaacataatcaatattgctctctaacataatgcagaatagattactatagatcaaattgtgtcttcttttcttctaga 17439119  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 11168124 - 11168180
Alignment:
Q  37 taaattatgctccaccacctcccttgatttatggccagaaagaaatttgattggaca 93  Q
    |||| ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  11168124 taaaatatgccccaccacctcccttgatttgtggtcagaaagaaatttgattggaca 11168180  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 41027287 - 41027382
Alignment:
Q  13 ataacatgtactcaatatttcctctaaattatgctccaccacctcccttgatttatggccagaaagaaatttgattggacaattgattatcgctag 108  Q
    ||||||||| |||||||||| || |||||||||| |||||| ||||||||| || | | |||| |||||||| |||||||||||||||||| ||||    
T  41027287 ataacatgttctcaatattttctttaaattatgccccaccatctcccttgaattgtcgtcagatagaaatttcattggacaattgattatctctag 41027382  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 557227 - 557322
Alignment:
Q  13 ataacatgtactcaatatttcctctaaattatgctccaccacctcccttgatttatggccagaaagaaatttgattggacaattgattatcgctag 108  Q
    ||||| |||||| |||||||||||||||||||   ||||||||||||||||||| || | || || ||| ||||||||||||||||| || |||||    
T  557227 ataacttgtacttaatatttcctctaaattatatcccaccacctcccttgatttgtgccaaggaaaaaaattgattggacaattgatcattgctag 557322  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 33397626 - 33397678
Alignment:
Q  38 aaattatgctccaccacctcccttgatttatggccagaaagaaatttgattgg 90  Q
    |||||||| |||||||||||||||||||||||||||| ||| |||||||||||    
T  33397626 aaattatggtccaccacctcccttgatttatggccaggaaggaatttgattgg 33397678  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 43108025 - 43108110
Alignment:
Q  14 taacatgtactcaatatttcctctaaattatgctccaccacctcccttgatttatggccagaaagaaatttgattggacaattgat 99  Q
    |||||| ||||||||||||   |||||||||| ||||||||||||||||| ||  ||| || ||||| ||||||||||||| ||||    
T  43108025 taacatatactcaatattttacctaaattatgatccaccacctcccttgaattgcggctaggaagaattttgattggacaaatgat 43108110  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 36322872 - 36322802
Alignment:
Q  36 ctaaattatgctccaccacctcccttgatttatggccagaaagaaatttgattggacaattgattatcgct 106  Q
    ||||||||||| ||||||||||||||||||| |||  || | |||||||||||| | ||| |||| |||||    
T  36322872 ctaaattatgccccaccacctcccttgatttgtgggaagcatgaaatttgattgaaaaatagattttcgct 36322802  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 42229039 - 42229115
Alignment:
Q  24 tcaatatttcctctaaattatgctccaccacctcccttgatttatggccagaaagaaatttgattggacaattgatt 100  Q
    ||||||||| | ||||||||||  ||||||| ||| |||||||||||| || ||  ||||||||||| |||||||||    
T  42229039 tcaatattttccctaaattatgtcccaccacatccgttgatttatggcaaggaacgaatttgattgggcaattgatt 42229115  T

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