View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20072_high_26 (Length: 337)
Name: NF20072_high_26
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20072_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 84 - 321
Target Start/End: Complemental strand, 17545026 - 17544789
Alignment:
| Q |
84 |
aaagttcaaactgttaagatgtgtttataaacaatggaattagtaaattaaaaagtggaaaacaagcatgttacaaaccttatccttgaaaccaagtgaa |
183 |
Q |
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| T |
17545026 |
aaagttcaaactgttaagatgtgtatataaacaatggaattagtaaataaaaaaatggaaatcaagcatgtcacaaaccttatccttgaaaccaagtgaa |
17544927 |
T |
|
| Q |
184 |
agcatttcatcaacctcatccataacaaacatctttatgcaatccaggcgagtacgccccctttgcagcacgccatacacattccccggagtaccaacaa |
283 |
Q |
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| T |
17544926 |
agcatttgatcaacctcatccataacaaacatctttatgcaatctaggcgagtacgccccctctgcagcatgtcatacacacacctcggagtaccaacaa |
17544827 |
T |
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| Q |
284 |
taatgtgcacaccacctttgaaaatgaattgatcatcc |
321 |
Q |
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| T |
17544826 |
taatgtgaacaccacctttgaaaatgaattgaccatcc |
17544789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 17545175 - 17545102
Alignment:
| Q |
13 |
agcagagattactccaacctgaatttcagagggaagtagcttgaagatttcatcaatctgcaacaccaatcaaa |
86 |
Q |
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| T |
17545175 |
agcagagattactccaacctgaattttgcatggtagtagcttgaagatttcatcgatctgcaacaccaatcaaa |
17545102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 6250408 - 6250531
Alignment:
| Q |
103 |
tgtgtttataaacaatggaattagtaaattaaaaag-tggaaaacaagcatgtt-acaaaccttatccttgaaaccaagtgaaagcatttcatcaacctc |
200 |
Q |
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| T |
6250408 |
tgtgtttacaaacaatggaataagtaaagtcaaaaggtggaaaatgagcatattgacgtacctgatccttgaaaccacgtgaaagcatttcatcagcttc |
6250507 |
T |
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| Q |
201 |
atccataacaaacatctttatgca |
224 |
Q |
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| T |
6250508 |
atccagaacaaacatctttatgca |
6250531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 209
Target Start/End: Original strand, 6241469 - 6241601
Alignment:
| Q |
82 |
tcaaagttcaaactgttaagatgtgtttataaacaatggaattagtaaattaaa---aagtggaaaacaagcatgt--tacaaaccttatccttgaaacc |
176 |
Q |
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||||||||||||||| ||||||||||||||||||||| |||| ||||| |||| || |||||| |||| || | ||||||||| |||| |||| | |
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| T |
6241469 |
tcaaagttcaaactgataagatgtgtttataaacaatataatttgtaaagtaaaaacaaatggaaatcaagtatatcgaacaaaccttttcctcgaaatc |
6241568 |
T |
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| Q |
177 |
aagtgaaagcatttcatcaacctcatccataac |
209 |
Q |
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| T |
6241569 |
acatgaaagcatttcatcaacctcatccataac |
6241601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 6241285 - 6241347
Alignment:
| Q |
16 |
agagattactccaacctgaatttcagagggaagtagcttgaagatttcatcaatctgcaacac |
78 |
Q |
| |
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| T |
6241285 |
agagattactccaacctgaattttgtagggcaatagctggaagattttatcgatctgcaacac |
6241347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 42718055 - 42717994
Alignment:
| Q |
166 |
tccttgaaaccaagtgaaagcatttcatcaacctcatccataacaaacatctttatgcaatc |
227 |
Q |
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| T |
42718055 |
tccttgaaaccacgtgaaagcatttcatcagcttcatccaaaacaaacattttaatgcaatc |
42717994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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