View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20072_high_28 (Length: 322)
Name: NF20072_high_28
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20072_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 304
Target Start/End: Complemental strand, 36568761 - 36568474
Alignment:
| Q |
11 |
cagagaaccgttaatggttcaaatcaaggaagaaagttattgacagaaaagggaagcagaagcagaagcagtagcaaagaaaaattattatttttctcct |
110 |
Q |
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| T |
36568761 |
cagagaatcgttaatggttcaaatcaaggaagaaagttattgacagaaaagggaagcagaagcag------tagcaaagaaaaattattatttttctcct |
36568668 |
T |
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| Q |
111 |
tttattttaaatcttgatttataagggaagtgtgaaagatgaaacaaaacaaaagaacaaggtctttannnnnnnnnnnnttgataatgatatatctacc |
210 |
Q |
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| T |
36568667 |
tttattttaaatcttgatttataagggaagtgtgaaagatgaaacaaaacaaaagaacaaggtctttagtgtgtgtgtgtttgataatgatatatctacc |
36568568 |
T |
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| Q |
211 |
tgcatgttgttatatctattgaaagttttggagcaaacagggcaagagaactgagttggaccaatgagaatttgagaaggagtagggatccaat |
304 |
Q |
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| T |
36568567 |
tgcatgttgttatatctattgaaagttttggagcaaacagggcaagagaactgagttggaccaatgagaatttgagaaggagtagggatccaat |
36568474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 208 - 304
Target Start/End: Original strand, 21038358 - 21038454
Alignment:
| Q |
208 |
acctgcatgttgttatatctattgaaagttttggagcaaacagggcaagagaactgagttggaccaatgagaatttgagaaggagtagggatccaat |
304 |
Q |
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| T |
21038358 |
acctgcatgttgttgtatctgttgaaggttttgcagcaaacaggacaagagaattgtgtaggaccaataagaatctgagaaggagtagggatccaat |
21038454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 304
Target Start/End: Complemental strand, 41939469 - 41939373
Alignment:
| Q |
208 |
acctgcatgttgttatatctattgaaagttttggagcaaacagggcaagagaactgagttggaccaatgagaatttgagaaggagtagggatccaat |
304 |
Q |
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| T |
41939469 |
acctgcatgttgttgaaacggttgaaggttttgttgcaaacagtgcaagaaaactgggtaggaccaacaaggatttgagcaggagaagggatccaat |
41939373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 304
Target Start/End: Complemental strand, 41937702 - 41937600
Alignment:
| Q |
202 |
atatctacctgcatgttgttatatctattgaaagttttggagcaaacagggcaagagaactgagttggaccaatgagaatttgagaaggagtagggatcc |
301 |
Q |
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|||| ||||||||||||||| ||||||||||| || ||| | |||| |||||| || ||||| |||||||| || ||||| |||| ||| |||||||||| |
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| T |
41937702 |
atatatacctgcatgttgttgtatctattgaaggtcttgaaacaaagagggcatgaaaactgtgttggaccgattagaatctgagcaggggtagggatcc |
41937603 |
T |
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| Q |
302 |
aat |
304 |
Q |
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||| |
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| T |
41937602 |
aat |
41937600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 304
Target Start/End: Original strand, 13518748 - 13518835
Alignment:
| Q |
217 |
ttgttatatctattgaaagttttggagcaaacagggcaagagaactgagttggaccaatgagaatttgagaaggagtagggatccaat |
304 |
Q |
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||||| ||||| ||||||||||| ||||| ||||| || ||||| || || ||||||||||||||||||||||| || || ||||||| |
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| T |
13518748 |
ttgttgtatctgttgaaagttttagagcacacaggacatgagaattgtgtaggaccaatgagaatttgagaaggtgttggaatccaat |
13518835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 304
Target Start/End: Original strand, 13608281 - 13608368
Alignment:
| Q |
217 |
ttgttatatctattgaaagttttggagcaaacagggcaagagaactgagttggaccaatgagaatttgagaaggagtagggatccaat |
304 |
Q |
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||||| ||||| ||||||||||| ||||| ||||| || ||||| || || ||||||||||||||||||||||| || || ||||||| |
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| T |
13608281 |
ttgttgtatctgttgaaagttttagagcacacaggacatgagaattgtgtaggaccaatgagaatttgagaaggtgttggaatccaat |
13608368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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