View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20072_high_3 (Length: 760)
Name: NF20072_high_3
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20072_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 254 - 740
Target Start/End: Original strand, 40640878 - 40641364
Alignment:
| Q |
254 |
attctaatctcaatggctcagatatcaaatcttgnnnnnnnagcttccattttccttttcaacatcataaacattccattccttacaattgttatttcct |
353 |
Q |
| |
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|||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40640878 |
attctaatctcaatggctcacgtttcaaatcttgtttttttagcttccattttccttttcaacatcataaacattccattccttacaaatgttatttcct |
40640977 |
T |
|
| Q |
354 |
catgcaacggaccttgtaaaactctcaacgactgcgctggtcaactcatttgcatcaatggaaaatgcaacgatgaccccgacgttgggaccaacatatg |
453 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40640978 |
catgcaacggaccttgtaaaactctcaacgactgcgctggtcaactcatttgcatcaatggaaaatgcaacgatgaccctgacgttgggaccaacatatg |
40641077 |
T |
|
| Q |
454 |
caccaaaccttcaccgccatcaccaagtggcgacaagtgtaaatcttccggcaccttagaatacgacgaagaatcattccctcaattcaagtgctctcca |
553 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40641078 |
caccaaaccttcaccgccatcaccaagtggcgacaagtgtaaatcttccggcaccttagaatacgacggagaatcattccctcaattcaagtgctctcca |
40641177 |
T |
|
| Q |
554 |
ccagtctcatcttccacacaagcattactcacgttgaatgatttcagcgagggtggagacggaggagctccatctcagtgcgacgaacagttccatagca |
653 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
40641178 |
ccagtctcatcttccacacaagcattactcacgttgaatgatttcagcgagggtggagacgaaggagctccatcacagtgcgacgaacagttccatagct |
40641277 |
T |
|
| Q |
654 |
actcagaaagagtagtggcgctgtccactgggtggtacagcggaggttcaaggtgtggaatcatgacatgttggttgaagtattctc |
740 |
Q |
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| T |
40641278 |
actcagaaagagtagtggcgctgtccactgggtggtacaacggaggttcaaggtgtggaatcatgacatgttggttgaagtattctc |
40641364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 441
Target Start/End: Complemental strand, 40618004 - 40617575
Alignment:
| Q |
16 |
aatatattatagtttagaatgaattaagtatgattaaaagactcgcaaaaactagtcaaaacttgcaatttgttccaattttcaaaattagatgctcaat |
115 |
Q |
| |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40618004 |
aatatcttatagtttagaatgaattaagtataattaaaagactcgcaaaaactagtcaaaacttgctatttgttccaattttcaaaattagatgctcaat |
40617905 |
T |
|
| Q |
116 |
ttgtattct-agttaggtataataa---ctccatggtgggtacaatacaacatttgggactctatatatatggacatgcaattgccctatatatgccaaa |
211 |
Q |
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||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40617904 |
ttgtattctgatttaggtataataataactccatggtgggtacaatacaacatttgggactctatatatatggacatgcaattgccctatatatgccaaa |
40617805 |
T |
|
| Q |
212 |
gtaacacttgaagctcgagcacacaaaatctactcactctctattctaatctcaatggctcagatatcaaatcttgnnnnnnnagcttccattttccttt |
311 |
Q |
| |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
40617804 |
gtaacacttgaagctcaagcacacaaaaactactcactctctattctaatctcaatggctcagatatcaaatcttgtttttttagcttccattttctttt |
40617705 |
T |
|
| Q |
312 |
tcaacatcataaacattccattccttacaattgttatttcctcatgcaacggaccttgtaaaactctcaacgactgcgctggtcaactcatttgcatcaa |
411 |
Q |
| |
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| |||||||||||| ||||||||| || || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40617704 |
ttaacatcataaacggtccattcctcacggatgctatttcctcatgcaacggaccttgtagaactctcaacgactgcgctggtcaactcatttgcatcaa |
40617605 |
T |
|
| Q |
412 |
tggaaaatgcaacgatgaccccgacgttgg |
441 |
Q |
| |
|
|||||||||||||||||||| |||||||| |
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| T |
40617604 |
cggaaaatgcaacgatgaccctgacgttgg |
40617575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 248 - 713
Target Start/End: Complemental strand, 40628340 - 40627866
Alignment:
| Q |
248 |
ctctctattctaatctcaatggctcagatatcaaatcttgnnnnnnnagcttccattttccttttcaacatcataaacattccattccttacaattgtta |
347 |
Q |
| |
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|||||| |||||||||| ||||||| |||||||||||| ||||| ||||||||||||||| || ||||||||||||||||| |||| || || |
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| T |
40628340 |
ctctctgttctaatctcgatggctcgcatatcaaatcttatttttctagcttgcattttccttttcaatattataaacattccattcctcacaaatgcta |
40628241 |
T |
|
| Q |
348 |
tttcctcatgcaacggaccttgtaaaactctcaacgactgcgctggtcaactcatttgcatcaatggaaaatgcaacgatgaccccgacgttgggaccaa |
447 |
Q |
| |
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||||||||||||| ||||| || || |||||||| || || | ||||||||||||||||||||| || ||||||||||||||||||||| |||||||| | |
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| T |
40628240 |
tttcctcatgcaatggaccatgcaacactctcaatgattgtgatggtcaactcatttgcatcaacggcaaatgcaacgatgaccccgacattgggaccca |
40628141 |
T |
|
| Q |
448 |
catatgcaccaaaccttcaccgccatcaccaagt---------ggcgacaagtgtaaatcttccggcaccttagaatacgacgaagaatcattccctcaa |
538 |
Q |
| |
|
||| |||||||| || |||||| || |||||||| |||| || || |||| |||||||||||| | | | | || |||||| ||||||| |
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| T |
40628140 |
catctgcaccaatccctcaccgtcaccaccaagtggcggtggtggcggcacttgccaatcctccggcaccttacagtgcaaaaaaaaatcataccctcaa |
40628041 |
T |
|
| Q |
539 |
ttcaagtgctctccaccagtctcatcttccacacaagcattactcacgttgaatgatttcagcgagggtggagacggaggagctccatctcagtgcgacg |
638 |
Q |
| |
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| | ||| ||||||||||| ||||| || |||||||||| ||||||| | || |||||||||||||||||||||||||||| ||| ||||| ||||| | |
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| T |
40628040 |
tataggtgttctccaccagtttcatcctctacacaagcatcactcacgctcaacgatttcagcgagggtggagacggaggaggtccgtctcaatgcgatg |
40627941 |
T |
|
| Q |
639 |
aacagttccatagcaactcagaaagagtagtggcgctgtccactgggtggtacagcggaggttcaaggtgtggaa |
713 |
Q |
| |
|
|| | | ||| |||||| |||||||| ||||| |||||||||||||||||| |||||||||||| ||||||| |
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|
| T |
40627940 |
aaaaataccacgacaactcggaaagagtggtggctttgtccactgggtggtacaacggaggttcaagatgtggaa |
40627866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 248 - 455
Target Start/End: Complemental strand, 40611131 - 40610924
Alignment:
| Q |
248 |
ctctctattctaatctcaatggctcagatatcaaatcttgnnnnnnnagcttccattttccttttcaacatcataaacattccattccttacaattgtta |
347 |
Q |
| |
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||||||| | || |||||||| ||| ||||||||||||| |||||||||||||||||||||||| | |||| |||| ||||| || | | || |
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|
| T |
40611131 |
ctctctactatactctcaatgactctcatatcaaatcttgtttttctagcttccattttccttttcaacattacaaaccttcctttcctcaccaacgcta |
40611032 |
T |
|
| Q |
348 |
tttcctcatgcaacggaccttgtaaaactctcaacgactgcgctggtcaactcatttgcatcaatggaaaatgcaacgatgaccccgacgttgggaccaa |
447 |
Q |
| |
|
|||| |||||||||||| || || |||||||||||| ||||||||||||||||||||| |||||||| ||||||||||| || |||||||| | |
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|
| T |
40611031 |
tttcttcatgcaacggaggatgcaacgatctcaacgactgttatggtcaactcatttgcatcaacggaaaatgtaacgatgacccagatattgggaccca |
40610932 |
T |
|
| Q |
448 |
catatgca |
455 |
Q |
| |
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||| |||| |
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| T |
40610931 |
catctgca |
40610924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 532 - 600
Target Start/End: Complemental strand, 40610841 - 40610773
Alignment:
| Q |
532 |
ccctcaattcaagtgctctccaccagtctcatcttccacacaagcattactcacgttgaatgatttcag |
600 |
Q |
| |
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|||||||| | |||||||||||| ||| ||||| |||||||||||||||||||||| |||||||||||| |
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|
| T |
40610841 |
ccctcaataccagtgctctccacgagtttcatcctccacacaagcattactcacgtggaatgatttcag |
40610773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 608 - 713
Target Start/End: Complemental strand, 40617260 - 40617155
Alignment:
| Q |
608 |
ggagacggaggagctccatctcagtgcgacgaacagttccatagcaactcagaaagagtagtggcgctgtccactgggtggtacagcggaggttcaaggt |
707 |
Q |
| |
|
||||||||||||| | | ||||||||||| || |||||||||||||| |||||| | ||||| | || ||||| |||||||| ||||||||||||| |
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|
| T |
40617260 |
ggagacggaggaggtgcttctcagtgcgatgagatattccatagcaactcggaaagaatcgtggcattatcgactggatggtacagtggaggttcaaggt |
40617161 |
T |
|
| Q |
708 |
gtggaa |
713 |
Q |
| |
|
|||||| |
|
|
| T |
40617160 |
gtggaa |
40617155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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