View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20072_high_30 (Length: 317)
Name: NF20072_high_30
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20072_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 2 - 305
Target Start/End: Original strand, 27644438 - 27644741
Alignment:
| Q |
2 |
cgtcctcgtcctcgtcttcatcttcatcttcatcaactcctgtaaaagtccaagcaagttcttcacgaagtttttcctcttctcccggcaaaaactcagt |
101 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27644438 |
cgtcctcgtcttcatcttcatcttcatcttcatcaactcctgtaaaagtccaagcaagttcttcacgaagcttttcctcttctcccggcaaaaactcagt |
27644537 |
T |
|
| Q |
102 |
atcctcaactccaaaatacttcctcacatactcaacactcttgttcgcaattcgatcagcaataacctgactcgtaaaatcaagaagcttcttcatatcc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27644538 |
atcctcaactccaaaatacttcctcacatactcaacactcttgttcgcaattcgatcagcaataacctgactcgtaaaatcaagaagcttcttcatatcc |
27644637 |
T |
|
| Q |
202 |
aagtaattagcagcaagaaaaagatccttcacctcttcattgtcgagattcttcacgaactcggcttcgaaggccttgttgatctctccagcgacattct |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27644638 |
aagtaattagcagcaagaaaaagatccttcacctcttcattgtcgagattcttcacgaactcggcttcgaaggccttgttgatctctccagcgacattct |
27644737 |
T |
|
| Q |
302 |
tctc |
305 |
Q |
| |
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|||| |
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| T |
27644738 |
tctc |
27644741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 27548945 - 27549239
Alignment:
| Q |
13 |
tcgtcttcatcttcatcttcatcaactcctgtaaaagtccaagcaagttcttcacgaagtttttcctcttctcccggcaaaaactcagtatcctcaactc |
112 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
27548945 |
tcgtcttcatcttcatctttgtcaactcctgtaaaactccaagcaagttcttcacgaagcttttcctcttctcccggcaaaaactcagtatcctcaatgc |
27549044 |
T |
|
| Q |
113 |
caaaatacttcctcacatactcaacactcttgttcgcaattcgatcagcaataacctgactcgtaaaatcaagaagcttcttcatatccaagtaattagc |
212 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
27549045 |
caaaatacttcctcacatactccacactcttgttctcaattcgatcagcaataacctggctcgtaaaatcaagaagcttcttcgtatccaagtaattagc |
27549144 |
T |
|
| Q |
213 |
agcaagaaaaagatccttcacctcttcattgtcgagattcttcacgaactcggcttcgaaggccttgttgatctctccagcgacattcttctcac |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27549145 |
agcaagaaaaagatccttcacctcttcattgtcgagattcttcacgaactcagcttcgaaggccttgttgatctctccagcgacattcttttcac |
27549239 |
T |
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