View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20072_high_36 (Length: 263)
Name: NF20072_high_36
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20072_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 47298433 - 47298234
Alignment:
| Q |
17 |
cagaagttacttactactatagcttaaaggtggtgagtaggacaaatatagaagatagagctacttggattccataaacatagataaagggaataaggaa |
116 |
Q |
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| T |
47298433 |
cagaagttacttactactatagcttaaaggtggtgagtaggacaaatatagaagatagagctacttggattccataaacatagataaagggaataaggaa |
47298334 |
T |
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| Q |
117 |
attgtacaagaaaaacaaaggaactatgacaaataatctcgcattcacacaggaactacaagtatgattccgtagaagttaaagggaactaagaaattgc |
216 |
Q |
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| T |
47298333 |
attgtacaagaaaaacaaaggaactatgacaaataatctcgcattcacacagaaactacaagtatgattctgtagaagttaaagggaactaataaattgc |
47298234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 31190244 - 31190186
Alignment:
| Q |
97 |
tagataaagggaataaggaaattgtacaagaaaaacaaaggaactatgacaaataatct |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31190244 |
tagataaagggaataaggaaattgtacaagaaaaacaaaggaactatgacaaatcatct |
31190186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 97 - 164
Target Start/End: Original strand, 16809981 - 16810049
Alignment:
| Q |
97 |
tagataaagggaataaggaaattgtacaagaaaaacaaaggaactatgacaaataatc-tcgcattcac |
164 |
Q |
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| T |
16809981 |
tagataaagggaataaggaaattgtacaagaaaaacaaaggaactatgacaaatcatcttcgcattcac |
16810049 |
T |
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