View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20072_high_42 (Length: 232)
Name: NF20072_high_42
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20072_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 5858073 - 5857876
Alignment:
| Q |
18 |
gtaactaattgtcataggattagatagcatacaattggtatattgtagttattctactcatcaaggatctctatataagttgtaatgctattatgttttc |
117 |
Q |
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| T |
5858073 |
gtaactaactgtcataggattagatagcatacaattggtatattgtagttattctactcatcaaggatctctatataagttgtaatgctactatgttttc |
5857974 |
T |
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| Q |
118 |
gttaatgagaattatacttcattcatttcttctcttcataatatggtatcagtgactttctc-tttgagagagaaagtttaatacacatgcttccgcc |
214 |
Q |
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| T |
5857973 |
gttaatgagaattatacttcattcatttcttctcttcataatatggtatcagtgactttctcttttgagagagaaagtttaatacacatgcttccgcc |
5857876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 19432425 - 19432571
Alignment:
| Q |
18 |
gtaactaattgtcataggattagatagcatacaattggtatatt-gtagttattctactcatcaaggatctctatataagttgtaatgctattatgtt-- |
114 |
Q |
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| T |
19432425 |
gtaactaactgccataggattagatagcatacagttcgtatatttgtagttattctggtcatctatgaaagctatataagctgtaatgctactatgatga |
19432524 |
T |
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| Q |
115 |
-ttcgttaatgagaattatacttcattcatttcttctcttcataata |
160 |
Q |
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| T |
19432525 |
tttcactaatgaaaaatatatttaattcatttcttctcttcataata |
19432571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 149
Target Start/End: Original strand, 28019015 - 28019126
Alignment:
| Q |
37 |
ttagatagcatacaattggtatattgtagttattctactcatcaaggatctctatataagttgtaatgctattatgttttcgttaatgagaattatactt |
136 |
Q |
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| T |
28019015 |
ttagattgcatacaattgatgtaccatagttattctattcatctacgatctctatataagttgtaatgcttctttgattcaattaatgagaatt-tgctt |
28019113 |
T |
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| Q |
137 |
cattcatttcttc |
149 |
Q |
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| T |
28019114 |
cattcatttcttc |
28019126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 12217307 - 12217376
Alignment:
| Q |
37 |
ttagatagcatacaattggtatattgtagttattctactcatcaaggatctctatataagttgtaatgct |
106 |
Q |
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| T |
12217307 |
ttagatagcatacagttggtgtattatagttgttctagtcgtctaggatctatatataagctgtaatgct |
12217376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 10850718 - 10850648
Alignment:
| Q |
90 |
atataagttgtaatgctattatgttttcgttaatgagaattatacttcattcatttcttctcttcataata |
160 |
Q |
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| T |
10850718 |
atataagctgtaatgctactatgatttcactaatgagaaatatattccattaatgtcttctcttcataata |
10850648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 6528642 - 6528697
Alignment:
| Q |
119 |
ttaatgagaattatacttcattcatttcttctcttcataatatggtatcagtgacttt |
176 |
Q |
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| T |
6528642 |
ttaatgagaataata-ttcattcattttctctct-cataatatggtatcagtgacttt |
6528697 |
T |
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