View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20072_high_44 (Length: 228)
Name: NF20072_high_44
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20072_high_44 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 25422210 - 25422410
Alignment:
| Q |
13 |
atcattgttaccggtgttgaaatagtctacaaccctcttggcatccaaatcgaaatcgactttgggagttgtagatcatgaacccactgaatagcttgtg |
112 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25422210 |
atcattattaccggtgttgaaatagtctacaaccctcttggcatccaactcgaaatcgactttgggagttgtagatcatgaacccactggatagcttgtg |
25422309 |
T |
|
| Q |
113 |
acagacccaaagcttcacctatatccaacacataca--gggcttcaccacgtcgttcttgctttcacaaaattccagcgatcgtctcggatacacatacc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25422310 |
acagacccaaagcttcacctatatccaacacacacacgggacttcaccacgtcgttcttgctttcacaaaa-tccagcgatcgtctcggatacacatacc |
25422408 |
T |
|
| Q |
211 |
at |
212 |
Q |
| |
|
|| |
|
|
| T |
25422409 |
at |
25422410 |
T |
|
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Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 7176058 - 7175860
Alignment:
| Q |
13 |
atcattgttaccggtgttgaaatagtctacaaccctcttggcatccaaatcgaaatcgac-tttgggagttgtagatcatgaacccactgaatagcttgt |
111 |
Q |
| |
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||||| |||||| ||||| |||||||||||||| |||||| ||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
7176058 |
atcatcgttacccgtgtt-aaatagtctacaactctcttgacatccaactcgaaattgacatttgggagttgtagatcatgaacccactggatagcttgt |
7175960 |
T |
|
| Q |
112 |
gacagacccaaagcttcacctatatccaacacatacagggcttcaccacgtcgttcttgctttcacaaaattccagcgatcgtctcggatacacatacca |
211 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| | || || ||| ||||| |||| ||||||||||||||||||| |||||| |||||||||||||||||| |
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|
| T |
7175959 |
gacagacc-aaagcttcacctatatccgacaaacacgggtcttgaccacatcgtccttgctttcacaaaattcccgcgatcatctcggatacacatacca |
7175861 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 26622602 - 26622400
Alignment:
| Q |
13 |
atcattgttaccggtgttgaaatagtctacaaccctcttggcatccaaatcgaaatcgac-tttgggagttgtagatcatgaacccactgaatagcttgt |
111 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||| |||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||| |
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| T |
26622602 |
atcattgttacctatgttgaaatggtctacaactctcttggcttccaactcgaaatcgacatttgggagttgtagctcatgaacccactggatagcttgt |
26622503 |
T |
|
| Q |
112 |
gacagacccaaagcttcacctatatccaacacataca--gggcttcaccacgtcgttcttgctttcacaaaattccagcgatcgtctcggatacacatac |
209 |
Q |
| |
|
|||| |||| |||||||||||| |||| ||||| ||| |||||| ||||| |||| ||| ||||||||||||||| ||||| |||||||||||||||| |
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|
| T |
26622502 |
gacaaaccctaagcttcacctacatccgacacacacacggggcttgaccacatcgtccttactttcacaaaattcccgcgattatctcggatacacatac |
26622403 |
T |
|
| Q |
210 |
cat |
212 |
Q |
| |
|
||| |
|
|
| T |
26622402 |
cat |
26622400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 36877716 - 36877613
Alignment:
| Q |
26 |
gtgttgaaatagtctacaaccctcttggcatccaaatcgaaatcgac-tttgggagttgtagatcatgaacccactgaatagcttgtgacagacccaaag |
124 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||| || |||| ||| |||||||||||||||||| ||||||| | |||||||||||||||||||||| |
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|
| T |
36877716 |
gtgttgaaatagtctacaatcctcttgacatccaactcaaaattgacatttgggagttgtagatcaggaacccattagatagcttgtgacagacccaaag |
36877617 |
T |
|
| Q |
125 |
cttc |
128 |
Q |
| |
|
|||| |
|
|
| T |
36877616 |
cttc |
36877613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 20463721 - 20463824
Alignment:
| Q |
33 |
aatagtctacaaccctcttggcatccaaatcgaaatcgactttgg-gagttgtagatcatgaacccactgaatagcttgtgacagacccaaagcttcacc |
131 |
Q |
| |
|
|||| |||||||||| |||||||||| || ||||| || || | |||||| || ||||| |||||||| ||||| | ||||||||||||||||||||| |
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|
| T |
20463721 |
aataatctacaacccgtttggcatccatctcaaaatcaacattagtgagttgcagctcatgtacccactggatagcatatgacagacccaaagcttcacc |
20463820 |
T |
|
| Q |
132 |
tata |
135 |
Q |
| |
|
|||| |
|
|
| T |
20463821 |
tata |
20463824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 11524232 - 11524335
Alignment:
| Q |
33 |
aatagtctacaaccctcttggcatccaaatcgaaatcgactttgg-gagttgtagatcatgaacccactgaatagcttgtgacagacccaaagcttcacc |
131 |
Q |
| |
|
|||| |||||| ||| |||||||||| || |||||||| || | |||||| || ||||| |||||||||||||| | ||||||||||||||||||||| |
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|
| T |
11524232 |
aataatctacagcccgtttggcatccatctcaaaatcgacattagtgagttgcagctcatgtacccactgaatagcatatgacagacccaaagcttcacc |
11524331 |
T |
|
| Q |
132 |
tata |
135 |
Q |
| |
|
|||| |
|
|
| T |
11524332 |
tata |
11524335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 135
Target Start/End: Complemental strand, 34673698 - 34673595
Alignment:
| Q |
33 |
aatagtctacaaccctcttggcatccaaatcgaaatcgactttgg-gagttgtagatcatgaacccactgaatagcttgtgacagacccaaagcttcacc |
131 |
Q |
| |
|
|||| |||||||||| |||||||||| || |||||||| || | |||||| || ||||| ||||| || ||||| | |||||| |||||||||||||| |
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|
| T |
34673698 |
aataatctacaacccgtttggcatccatctcaaaatcgacgttagtgagttgcagctcatgtacccattggatagcatatgacaggcccaaagcttcacc |
34673599 |
T |
|
| Q |
132 |
tata |
135 |
Q |
| |
|
|||| |
|
|
| T |
34673598 |
tata |
34673595 |
T |
|
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