View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20072_high_45 (Length: 227)
Name: NF20072_high_45
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20072_high_45 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 11769226 - 11769451
Alignment:
| Q |
1 |
actccccacagaatcccaccacgtaacgaaaacacatgatcccccatgcagccagtctgtcaacggctagattccatcttgaagagtttattctcttaaa |
100 |
Q |
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| T |
11769226 |
actctccaaagaatcccaccacgtaacgaaaacacatgatcccccatgcagccagtctgtcaacggctagattccatcttcaagagtttattctcttaaa |
11769325 |
T |
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| Q |
101 |
tcgaacggtccagatcatctctcttataccccactaaatcattgcatcatcactcaacacaacacccaaacactaatccccaatccctttttctacgcgg |
200 |
Q |
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| T |
11769326 |
tcgaacggtccagatcatctctcttataccccactaaatcattgcatcatcactcaacacaacacgcaaacact-atccccaatccctttttctacgcgg |
11769424 |
T |
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| Q |
201 |
agaagggaacggcgctgttttcatctc |
227 |
Q |
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| T |
11769425 |
agaagggaacggcgctgttctcatctc |
11769451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 8359718 - 8359670
Alignment:
| Q |
147 |
tcatcactcaacacaacacccaaacactaatccccaatccctttttcta |
195 |
Q |
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| T |
8359718 |
tcatcactcaacacaacacccaaacaccatcccccaatccctttttcta |
8359670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 39291886 - 39291934
Alignment:
| Q |
147 |
tcatcactcaacacaacacccaaacactaatccccaatccctttttcta |
195 |
Q |
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| T |
39291886 |
tcatcactcaacacaacacccaaacaccatgccccaatccctttttcta |
39291934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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