View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20072_high_6 (Length: 612)
Name: NF20072_high_6
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20072_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 16 - 595
Target Start/End: Complemental strand, 40618004 - 40617421
Alignment:
| Q |
16 |
aatatattatagtttagaatgaattaagtatgattaaaagactcgcaaaaactagtcaaaacttgcaatttgttccaattttcaaaattagatgctcaat |
115 |
Q |
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| T |
40618004 |
aatatcttatagtttagaatgaattaagtataattaaaagactcgcaaaaactagtcaaaacttgctatttgttccaattttcaaaattagatgctcaat |
40617905 |
T |
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| Q |
116 |
ttgtattct-agttaggtataataa---ctccatggtgggtacaatacaacatttgggactctatatatatggacatgcaattgccctatatatgccaaa |
211 |
Q |
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| T |
40617904 |
ttgtattctgatttaggtataataataactccatggtgggtacaatacaacatttgggactctatatatatggacatgcaattgccctatatatgccaaa |
40617805 |
T |
|
| Q |
212 |
gtaacacttgaagctcgagcacacaaaatctactcactctctattctaatctcaatggctcagatatcaaatcttgnnnnnnnagcttccattttccttt |
311 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
40617804 |
gtaacacttgaagctcaagcacacaaaaactactcactctctattctaatctcaatggctcagatatcaaatcttgtttttttagcttccattttctttt |
40617705 |
T |
|
| Q |
312 |
tcaacatcataaacattccattccttacaattgttatttcctcatgcaacggaccttgtaaaactctcaacgactgcgctggtcaactcatttgcatcaa |
411 |
Q |
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| T |
40617704 |
ttaacatcataaacggtccattcctcacggatgctatttcctcatgcaacggaccttgtagaactctcaacgactgcgctggtcaactcatttgcatcaa |
40617605 |
T |
|
| Q |
412 |
cggaaaatgcaacgatgaccctgacgttgggacccgcatctgctcccaaccatcaccttcaccaccaccaccaagcggggatggtgggacttgccgaacc |
511 |
Q |
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| T |
40617604 |
cggaaaatgcaacgatgaccctgacgttggaacccgcatctgctcccaaccatcaccttcaccaccaccaccaagcgggggtggtgggacttgccgaacc |
40617505 |
T |
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| Q |
512 |
tccggcaacttacagtgcgatggacaatcataccctcaatataggtgttctccaccctatgtatcctccggcacacaagcatta |
595 |
Q |
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| T |
40617504 |
tctggcaacttacagtgcgatggacaatcataccctcaatataggtgttctccaccctatgtatcctccggcacacaagcatta |
40617421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 254 - 445
Target Start/End: Original strand, 40640878 - 40641069
Alignment:
| Q |
254 |
attctaatctcaatggctcagatatcaaatcttgnnnnnnnagcttccattttccttttcaacatcataaacattccattccttacaattgttatttcct |
353 |
Q |
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| T |
40640878 |
attctaatctcaatggctcacgtttcaaatcttgtttttttagcttccattttccttttcaacatcataaacattccattccttacaaatgttatttcct |
40640977 |
T |
|
| Q |
354 |
catgcaacggaccttgtaaaactctcaacgactgcgctggtcaactcatttgcatcaacggaaaatgcaacgatgaccctgacgttgggacc |
445 |
Q |
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| T |
40640978 |
catgcaacggaccttgtaaaactctcaacgactgcgctggtcaactcatttgcatcaatggaaaatgcaacgatgaccctgacgttgggacc |
40641069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 248 - 567
Target Start/End: Complemental strand, 40628340 - 40628024
Alignment:
| Q |
248 |
ctctctattctaatctcaatggctcagatatcaaatcttgnnnnnnnagcttccattttccttttcaacatcataaacattccattccttacaattgtta |
347 |
Q |
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|||||| |||||||||| ||||||| |||||||||||| ||||| ||||||||||||||| || ||||||||||||||||| |||| || || |
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| T |
40628340 |
ctctctgttctaatctcgatggctcgcatatcaaatcttatttttctagcttgcattttccttttcaatattataaacattccattcctcacaaatgcta |
40628241 |
T |
|
| Q |
348 |
tttcctcatgcaacggaccttgtaaaactctcaacgactgcgctggtcaactcatttgcatcaacggaaaatgcaacgatgaccctgacgttgggacccg |
447 |
Q |
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| T |
40628240 |
tttcctcatgcaatggaccatgcaacactctcaatgattgtgatggtcaactcatttgcatcaacggcaaatgcaacgatgaccccgacattgggaccca |
40628141 |
T |
|
| Q |
448 |
catctgctcccaaccatcaccttcaccaccaccaccaagcggggatggtgggacttgccgaacctccggcaacttacagtgcgatggacaatcataccct |
547 |
Q |
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| T |
40628140 |
catctgcaccaatccctcaccgt---caccaccaagtggcggtggtggcggcacttgccaatcctccggcaccttacagtgcaaaaaaaaatcataccct |
40628044 |
T |
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| Q |
548 |
caatataggtgttctccacc |
567 |
Q |
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| T |
40628043 |
caatataggtgttctccacc |
40628024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 248 - 454
Target Start/End: Complemental strand, 40611131 - 40610925
Alignment:
| Q |
248 |
ctctctattctaatctcaatggctcagatatcaaatcttgnnnnnnnagcttccattttccttttcaacatcataaacattccattccttacaattgtta |
347 |
Q |
| |
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||||||| | || |||||||| ||| ||||||||||||| |||||||||||||||||||||||| | |||| |||| ||||| || | | || |
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| T |
40611131 |
ctctctactatactctcaatgactctcatatcaaatcttgtttttctagcttccattttccttttcaacattacaaaccttcctttcctcaccaacgcta |
40611032 |
T |
|
| Q |
348 |
tttcctcatgcaacggaccttgtaaaactctcaacgactgcgctggtcaactcatttgcatcaacggaaaatgcaacgatgaccctgacgttgggacccg |
447 |
Q |
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| T |
40611031 |
tttcttcatgcaacggaggatgcaacgatctcaacgactgttatggtcaactcatttgcatcaacggaaaatgtaacgatgacccagatattgggaccca |
40610932 |
T |
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| Q |
448 |
catctgc |
454 |
Q |
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||||||| |
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| T |
40610931 |
catctgc |
40610925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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