View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20072_high_8 (Length: 519)

Name: NF20072_high_8
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20072_high_8
NF20072_high_8
[»] chr1 (31 HSPs)
chr1 (18-308)||(34870709-34871010)
chr1 (312-461)||(34870205-34870352)
chr1 (292-391)||(38028541-38028640)
chr1 (292-389)||(9768803-9768900)
chr1 (292-392)||(2643806-2643906)
chr1 (292-392)||(9769571-9769671)
chr1 (292-392)||(16182813-16182913)
chr1 (301-392)||(13941332-13941423)
chr1 (311-378)||(43327033-43327100)
chr1 (311-389)||(11238022-11238100)
chr1 (314-392)||(23750176-23750254)
chr1 (315-389)||(48260183-48260257)
chr1 (292-389)||(3341730-3341827)
chr1 (311-402)||(42908794-42908885)
chr1 (311-389)||(2903021-2903099)
chr1 (342-392)||(8758360-8758410)
chr1 (311-389)||(50199470-50199548)
chr1 (301-338)||(3140371-3140408)
chr1 (292-389)||(18003820-18003917)
chr1 (292-349)||(47141840-47141897)
chr1 (293-380)||(42801884-42801969)
chr1 (293-351)||(5862133-5862191)
chr1 (314-372)||(9527452-9527510)
chr1 (312-389)||(12553217-12553295)
chr1 (295-389)||(41677067-41677161)
chr1 (311-392)||(4511516-4511597)
chr1 (292-349)||(52961116-52961173)
chr1 (357-389)||(9976378-9976410)
chr1 (211-239)||(44723368-44723396)
chr1 (312-368)||(44949524-44949580)
chr1 (312-392)||(50898741-50898820)
[»] chr2 (23 HSPs)
chr2 (292-389)||(45314414-45314511)
chr2 (292-392)||(34644476-34644576)
chr2 (311-386)||(36413783-36413858)
chr2 (311-389)||(20942103-20942181)
chr2 (294-392)||(44487758-44487856)
chr2 (342-391)||(5807759-5807808)
chr2 (311-389)||(14307688-14307766)
chr2 (292-390)||(16538474-16538572)
chr2 (292-386)||(31088994-31089088)
chr2 (295-389)||(32288383-32288477)
chr2 (294-380)||(44132566-44132652)
chr2 (292-389)||(18089733-18089830)
chr2 (314-386)||(407505-407576)
chr2 (310-386)||(4529760-4529836)
chr2 (282-392)||(11727327-11727435)
chr2 (311-389)||(1244592-1244670)
chr2 (291-389)||(12206501-12206599)
chr2 (297-335)||(18054974-18055012)
chr2 (311-392)||(6496462-6496542)
chr2 (292-389)||(22355087-22355184)
chr2 (293-390)||(32944067-32944164)
chr2 (292-349)||(36277736-36277793)
chr2 (356-392)||(2394964-2395000)
[»] chr5 (24 HSPs)
chr5 (292-408)||(11246469-11246585)
chr5 (311-389)||(31556841-31556919)
chr5 (310-389)||(4985781-4985858)
chr5 (292-392)||(13862129-13862228)
chr5 (292-391)||(42553133-42553231)
chr5 (342-392)||(29561702-29561752)
chr5 (292-386)||(38040270-38040363)
chr5 (312-406)||(39684262-39684356)
chr5 (293-386)||(32252916-32253009)
chr5 (301-388)||(17557043-17557129)
chr5 (314-389)||(37986861-37986936)
chr5 (322-372)||(18175241-18175291)
chr5 (311-392)||(20186889-20186968)
chr5 (311-389)||(41539337-41539415)
chr5 (311-392)||(3535927-3536008)
chr5 (311-392)||(28768620-28768701)
chr5 (292-392)||(18101940-18102040)
chr5 (316-392)||(38129004-38129080)
chr5 (311-378)||(8018621-8018688)
chr5 (313-392)||(17137858-17137937)
chr5 (292-378)||(10106634-10106720)
chr5 (326-392)||(22687872-22687938)
chr5 (359-392)||(18535985-18536018)
chr5 (313-389)||(27006365-27006441)
[»] chr3 (25 HSPs)
chr3 (292-391)||(33533207-33533306)
chr3 (301-395)||(4045622-4045716)
chr3 (292-389)||(21248984-21249080)
chr3 (292-389)||(23237366-23237463)
chr3 (294-389)||(51017796-51017890)
chr3 (330-392)||(36842204-36842266)
chr3 (292-404)||(3461702-3461815)
chr3 (312-392)||(28951890-28951970)
chr3 (314-390)||(42665918-42665994)
chr3 (311-386)||(16999951-17000026)
chr3 (311-377)||(34407096-34407162)
chr3 (295-348)||(48894106-48894159)
chr3 (292-348)||(24890077-24890133)
chr3 (313-389)||(32080080-32080156)
chr3 (312-378)||(4478373-4478439)
chr3 (292-386)||(6128609-6128702)
chr3 (314-372)||(13616085-13616143)
chr3 (314-372)||(15498232-15498290)
chr3 (314-372)||(23820655-23820713)
chr3 (292-389)||(38507652-38507747)
chr3 (314-368)||(43774211-43774265)
chr3 (311-392)||(6054216-6054297)
chr3 (312-389)||(19137643-19137720)
chr3 (311-392)||(51493621-51493702)
chr3 (311-391)||(55318040-55318120)
[»] chr7 (18 HSPs)
chr7 (293-389)||(10020463-10020559)
chr7 (311-390)||(41012573-41012653)
chr7 (293-392)||(16814702-16814801)
chr7 (314-391)||(7162660-7162737)
chr7 (311-389)||(5773152-5773232)
chr7 (311-391)||(11808061-11808142)
chr7 (311-392)||(44409224-44409304)
chr7 (314-390)||(47355835-47355912)
chr7 (294-389)||(32309142-32309237)
chr7 (314-373)||(42260041-42260099)
chr7 (311-404)||(32814850-32814943)
chr7 (301-389)||(42181471-42181559)
chr7 (312-391)||(25304202-25304280)
chr7 (353-391)||(1772962-1773000)
chr7 (357-386)||(19687282-19687311)
chr7 (314-366)||(22660767-22660819)
chr7 (312-392)||(23470492-23470571)
chr7 (345-389)||(26734265-26734309)
[»] chr8 (24 HSPs)
chr8 (311-392)||(14011029-14011110)
chr8 (313-391)||(26773694-26773772)
chr8 (311-392)||(16808350-16808433)
chr8 (311-386)||(28979049-28979124)
chr8 (292-395)||(41531210-41531313)
chr8 (311-389)||(22847256-22847334)
chr8 (293-366)||(37288123-37288197)
chr8 (292-389)||(18577117-18577214)
chr8 (292-392)||(220353-220453)
chr8 (292-392)||(689508-689608)
chr8 (292-392)||(733976-734076)
chr8 (292-392)||(857872-857972)
chr8 (314-392)||(25139880-25139956)
chr8 (294-388)||(6372599-6372692)
chr8 (314-372)||(13537322-13537380)
chr8 (314-372)||(13626870-13626928)
chr8 (293-390)||(43554454-43554552)
chr8 (294-347)||(32940350-32940403)
chr8 (301-389)||(35779768-35779854)
chr8 (311-389)||(41792963-41793045)
chr8 (357-389)||(11900634-11900666)
chr8 (317-404)||(18123889-18123977)
chr8 (314-369)||(36467897-36467953)
chr8 (311-391)||(36593217-36593297)
[»] chr4 (18 HSPs)
chr4 (311-389)||(12585553-12585631)
chr4 (311-392)||(27921919-27922000)
chr4 (292-389)||(33359821-33359918)
chr4 (292-395)||(4419674-4419777)
chr4 (292-389)||(20610743-20610840)
chr4 (312-392)||(16336466-16336546)
chr4 (292-389)||(49039439-49039536)
chr4 (292-389)||(54854173-54854270)
chr4 (301-392)||(18740907-18740999)
chr4 (292-380)||(49319397-49319485)
chr4 (293-392)||(21023343-21023441)
chr4 (292-389)||(24039892-24039985)
chr4 (311-389)||(1589152-1589229)
chr4 (314-368)||(11872899-11872953)
chr4 (311-389)||(20166339-20166417)
chr4 (314-368)||(38433337-38433391)
chr4 (292-368)||(12820420-12820497)
chr4 (317-389)||(32048554-32048625)
[»] chr6 (16 HSPs)
chr6 (312-388)||(14339722-14339798)
chr6 (292-390)||(32540944-32541042)
chr6 (311-392)||(4844166-4844247)
chr6 (292-398)||(3029970-3030077)
chr6 (312-379)||(12341445-12341512)
chr6 (311-389)||(26669653-26669731)
chr6 (311-389)||(30833040-30833118)
chr6 (311-392)||(7374041-7374122)
chr6 (317-406)||(25165172-25165261)
chr6 (292-389)||(34524879-34524976)
chr6 (310-390)||(1488110-1488190)
chr6 (292-391)||(8176000-8176100)
chr6 (311-389)||(19680242-19680320)
chr6 (292-386)||(30668181-30668275)
chr6 (312-392)||(10455766-10455847)
chr6 (292-349)||(31639145-31639202)
[»] scaffold0054 (1 HSPs)
scaffold0054 (314-389)||(67187-67262)
[»] scaffold0079 (1 HSPs)
scaffold0079 (312-392)||(56314-56394)
[»] scaffold0129 (1 HSPs)
scaffold0129 (314-389)||(7082-7157)
[»] scaffold0119 (1 HSPs)
scaffold0119 (311-389)||(1062-1140)
[»] scaffold0219 (1 HSPs)
scaffold0219 (293-328)||(21019-21054)
[»] scaffold0009 (1 HSPs)
scaffold0009 (357-389)||(62782-62814)
[»] scaffold0002 (1 HSPs)
scaffold0002 (312-392)||(440423-440503)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 34871010 - 34870709
Alignment:
Q  18 atactaatagaaagcttcccatttcagtaaccaaagcatctcattcgtcttgttcataaataaggtaatctttgcggccttcttttccgcgtgccttgtg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34871010 atactaatagaaagcttcccatttcagtaaccaaagcatctcattcgtcttgttcataaataaggtaatctttgcggccttcttttccgcgtgccttgtg 34870911  T
Q  118 ttcctttcttttataaggaatctctttttctatatattaaatattatctccccttctatctatatttctaaaatataaaatgaataaagaagaatatttg 217  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34870910 ttcctttcttttataaggaatctctttttctttatattaaatattatctccccttctatctatatttctaaaatataaaatgaataaagaagaatatttg 34870811  T
Q  218 tacatttattttataata------------atttatttcatttgttttggaataaaaacaacgtagaaagagtcttcgtgagctatgcatagcttagttg 305  Q
    ||||||||||||||||||            ||||||||||||||||||||||| |||||||| |||||||||||| | |||||||||||||||| |||||    
T  34870810 tacatttattttataataatttttagaataatttatttcatttgttttggaat-aaaacaacatagaaagagtctccttgagctatgcatagctcagttg 34870712  T
Q  306 aca 308  Q
    |||    
T  34870711 aca 34870709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 312 - 461
Target Start/End: Complemental strand, 34870352 - 34870205
Alignment:
Q  312 acatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaaccgctggattacttaacacnn 411  Q
    ||||||||||||||||| ||||||||||| ||||||| |||| ||||||||||||||| ||| |||||||||||| ||||| || |||||||| |||       
T  34870352 acatgcattgttatatgcaggggtcggagttcgaaccatatatatcccacttattcattttg-aaaaagtgaattttaaccactagattacttgaca-aa 34870255  T
Q  412 nnnnnntagagaaagaaaataagattacaacaaaagtatgttgatttagt 461  Q
          ||||||||||||||||||||||||||||||||||||||||||||    
T  34870254 aaaaaatagagaaagaaaataagattacaacaaaagtatgttgatttagt 34870205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 292 - 391
Target Start/End: Original strand, 38028541 - 38028640
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaac 391  Q
    ||||| |||||||||||| ||||||||||||||||||   ||| ||||| |||||||||| ||| |||||||||||| ||||||||| ||||||||||||    
T  38028541 gcataacttagttgacaaggacatgcattgttatatgctagggccggagttcgaaccctagacaccccacttattcaccttgaaaaatgtgaattctaac 38028640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 292 - 389
Target Start/End: Complemental strand, 9768900 - 9768803
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||| ||||| ||  |||||||||||||||||| ||||||||| | ||||||||   ||| |||||||||||| ||||||||| ||||||||||    
T  9768900 gcatagctcagttggcagggacatgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattcaccttgaaaaaggtgaattcta 9768803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 392
Target Start/End: Complemental strand, 2643906 - 2643806
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaac 391  Q
    |||||||||||||| || ||||||||||| ||||||| | ||||||| | | |||||| | ||| |||||||||||| ||| ||||| ||||| ||||||    
T  2643906 gcatagcttagttggcagagacatgcattattatatgcatgggtcggggtttgaaccccagacaccccacttattcaccttaaaaaatgtgaactctaac 2643807  T
Q  392 c 392  Q
    |    
T  2643806 c 2643806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 392
Target Start/End: Complemental strand, 9769671 - 9769571
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaac 391  Q
    |||||||| ||||| ||  |||||||||| |||||||||||| | || | ||||||||   ||| |||||||||||| ||||||||| ||||||||||||    
T  9769671 gcatagctcagttggcagggacatgcattattatatgtagggattggggttcgaaccccggacaccccacttattcaccttgaaaaaggtgaattctaac 9769572  T
Q  392 c 392  Q
    |    
T  9769571 c 9769571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 392
Target Start/End: Original strand, 16182813 - 16182913
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaac 391  Q
    |||||||| ||||| || ||||||||||| |||||||||||||  || | || |||||   ||| ||||||||||||||||||||||  |||||||||||    
T  16182813 gcatagctcagttggcagagacatgcattattatatgtaggggctggggttcaaaccccggacaccccacttattcatcttgaaaaatatgaattctaac 16182912  T
Q  392 c 392  Q
    |    
T  16182913 c 16182913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 392
Target Start/End: Original strand, 13941332 - 13941423
Alignment:
Q  301 agttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    ||||| ||| |||||||||||||||||| |||| |||  | ||||||     ||| ||||||||||||||||||||||||||||||||||||    
T  13941332 agttggcaaggacatgcattgttatatgcagggttcgaggttcgaacttcggacaccccacttattcatcttgaaaaaagtgaattctaacc 13941423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 378
Target Start/End: Original strand, 43327033 - 43327100
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaa 378  Q
    |||||| ||||||||||| |||||||| || |||||||||| ||||||||||||||||| || |||||    
T  43327033 gacatgtattgttatatgcaggggtcgaagttcgaaccctaaacatcccacttattcattttaaaaaa 43327100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 11238100 - 11238022
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||||| ||||||| ||||||||| | ||||| ||   ||| |||||||||||||||||||||| ||||||||||    
T  11238100 gacatgcattattatatgcaggggtcggggttcgaatcccggacaccccacttattcatcttgaaaaaggtgaattcta 11238022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 314 - 392
Target Start/End: Original strand, 23750176 - 23750254
Alignment:
Q  314 atgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    ||||||||||||||  | ||||||| | || ||||||  ||| |||||||||||||||||||||| |||||||||||||    
T  23750176 atgcattgttatatacatgggtcggggttcaaaccctgaacaccccacttattcatcttgaaaaaggtgaattctaacc 23750254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 315 - 389
Target Start/End: Complemental strand, 48260257 - 48260183
Alignment:
Q  315 tgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||| |||||||| |||||||||| ||||||||   ||| |||||||||||| ||||||||| ||||||||||    
T  48260257 tgcattattatatgtcggggtcggagttcgaaccccggacaccccacttattcaccttgaaaaatgtgaattcta 48260183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 389
Target Start/End: Complemental strand, 3341827 - 3341730
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||| ||||| ||  |||||||||| ||||||| ||||| ||| | ||||||||   ||| |||||||||||| ||||||||| ||||||||||    
T  3341827 gcatagctcagttggcagggacatgcattattatatgcaggggccggggatcgaaccccggacaccccacttattcaccttgaaaaaggtgaattcta 3341730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 311 - 402
Target Start/End: Original strand, 42908794 - 42908885
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaaccgctggattac 402  Q
    |||||||||||||||||| ||||||||| | |||||| |   | | ||||||||||| |||||||||| | ||||||||||| || ||||||    
T  42908794 gacatgcattgttatatgcaggggtcggggttcgaactccggataccccacttattcttcttgaaaaaggagaattctaaccactagattac 42908885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 2903099 - 2903021
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||||||||||||| || |||||| | ||||||||   ||| |||||||||||| ||||||||| | ||||||||    
T  2903099 gacatgcattgttatatgcagaggtcggggttcgaaccccgaacaccccacttattcaccttgaaaaaggagaattcta 2903021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 392
Target Start/End: Complemental strand, 8758410 - 8758360
Alignment:
Q  342 tcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    |||||||||| |||||||||||||||||| || |||| |||||||||||||    
T  8758410 tcgaaccctagacatcccacttattcatcatggaaaatgtgaattctaacc 8758360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 50199548 - 50199470
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||||||||||||| ||||| ||| | ||||||||   ||| |||||||||||| ||||||||| || |||||||    
T  50199548 gacatgcattgttatatgcaggggccggggttcgaaccccggacaccccacttattcaccttgaaaaaggtcaattcta 50199470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 301 - 338
Target Start/End: Original strand, 3140371 - 3140408
Alignment:
Q  301 agttgacaaagacatgcattgttatatgtaggggtcgg 338  Q
    |||||||| |||||||||||||||||||||||||||||    
T  3140371 agttgacagagacatgcattgttatatgtaggggtcgg 3140408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 389
Target Start/End: Original strand, 18003820 - 18003917
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||| ||||| ||  |||||||||||||||||| ||||| ||| | |||| |||   ||| |||||||||||| || |||||| ||||||||||    
T  18003820 gcatagctcagttggcagggacatgcattgttatatgcaggggccggggttcgagccccgaacaccccacttattcacctggaaaaaggtgaattcta 18003917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 47141897 - 47141840
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccc 349  Q
    ||||| || ||||||||  |||||||||||||||||| ||||||||||| ||||||||    
T  47141897 gcataactcagttgacagggacatgcattgttatatgcaggggtcggagttcgaaccc 47141840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 380
Target Start/End: Original strand, 42801884 - 42801969
Alignment:
Q  293 catagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaag 380  Q
    ||||||| |||||||| ||||||||||||||||||| || ||| || | |||||||| | ||| ||||||  |||||||||| |||||    
T  42801884 catagctcagttgacagagacatgcattgttatatgcagaggttggggttcgaaccccagacaccccact--ttcatcttgagaaaag 42801969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 351
Target Start/End: Original strand, 5862133 - 5862191
Alignment:
Q  293 catagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaacccta 351  Q
    ||||||| ||||| ||  ||||||||||||||||||||| |||||| | ||||||||||    
T  5862133 catagctcagttggcagggacatgcattgttatatgtagaggtcggggttcgaacccta 5862191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 372
Target Start/End: Original strand, 9527452 - 9527510
Alignment:
Q  314 atgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatctt 372  Q
    ||||||||||||||| ||||||||| | | |||||||  ||| ||||||||||||||||    
T  9527452 atgcattgttatatgcaggggtcggggtttgaaccctggacaccccacttattcatctt 9527510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 389
Target Start/End: Original strand, 12553217 - 12553295
Alignment:
Q  312 acatgcattgttatatgtaggggtcggaggt-cgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    ||||||||||||||||| ||||| ||| ||| |||||||   ||| ||||||||||||  |||||||| ||||||||||    
T  12553217 acatgcattgttatatgcaggggccgggggttcgaaccccggacaccccacttattcactttgaaaaaggtgaattcta 12553295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 389
Target Start/End: Original strand, 41677067 - 41677161
Alignment:
Q  295 tagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    ||||| ||||| || |||||| |||| |||||||  |||||||| | |||||| |   ||| |||||||||||| ||||||||| ||||||||||    
T  41677067 tagctcagttggcagagacattcattattatatgcgggggtcggggttcgaactccggacaccccacttattcaccttgaaaaaggtgaattcta 41677161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 392
Target Start/End: Complemental strand, 4511597 - 4511516
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    |||||||||| ||||||| ||||||||| | | ||| ||   || ||||||||||||| ||| ||||| |||||||||||||    
T  4511597 gacatgcattattatatgcaggggtcggtgtttgaatcccggacgtcccacttattcaccttaaaaaaggtgaattctaacc 4511516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 52961173 - 52961116
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccc 349  Q
    |||||||| ||||| ||| |||||||||||||||||| ||||| ||| | ||||||||    
T  52961173 gcatagctcagttggcaaggacatgcattgttatatgcaggggccggggttcgaaccc 52961116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 389
Target Start/End: Complemental strand, 9976410 - 9976378
Alignment:
Q  357 cccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||||||| ||||||||||||||||||||    
T  9976410 cccacttattcaccttgaaaaaagtgaattcta 9976378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 239
Target Start/End: Original strand, 44723368 - 44723396
Alignment:
Q  211 atatttgtacatttattttataataattt 239  Q
    |||||||||||||||||||||||||||||    
T  44723368 atatttgtacatttattttataataattt 44723396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 368
Target Start/End: Original strand, 44949524 - 44949580
Alignment:
Q  312 acatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattca 368  Q
    ||||||||||||||||||| ||||||| | |||||||||  ||| |||| |||||||    
T  44949524 acatgcattgttatatgtacgggtcggggttcgaaccctgaacaccccatttattca 44949580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 392
Target Start/End: Complemental strand, 50898820 - 50898741
Alignment:
Q  312 acatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    ||||||||||||||||| ||| ||| |   |||||||| | ||| |||| ||||||||||| ||||| |||||||||||||    
T  50898820 acatgcattgttatatgcaggagtctggattcgaaccccagacacccca-ttattcatctttaaaaaggtgaattctaacc 50898741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 292 - 389
Target Start/End: Original strand, 45314414 - 45314511
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||| || ||||||||||||||||||||||||||| || |||||| | ||||||   | |||||||||||||||||||||||||| ||||||||||    
T  45314414 gcatagtttggttgacaaagacatgcattgttatatgcagaggtcggggttcgaacttcagacatcccacttattcatcttgaaaaatgtgaattcta 45314511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 392
Target Start/End: Complemental strand, 34644576 - 34644476
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaac 391  Q
    |||||||| |||||||| ||| ||||||||||||||||| || |||| | ||||| || | | |||||||||||||| ||| ||||  ||||||||||||    
T  34644576 gcatagctcagttgacagagatatgcattgttatatgtatggttcggggttcgaatccgagaaatcccacttattcaccttaaaaattgtgaattctaac 34644477  T
Q  392 c 392  Q
    |    
T  34644476 c 34644476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 386
Target Start/End: Original strand, 36413783 - 36413858
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaatt 386  Q
    |||||||||||||||||| ||||| ||||| |||||||||  ||| ||||||||||||  |||||||| |||||||    
T  36413783 gacatgcattgttatatgcaggggccggagttcgaaccctggacaccccacttattcactttgaaaaaggtgaatt 36413858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 20942181 - 20942103
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||||  |||||||||||||  |||| |||||||| | ||| | |||||||||| ||||||||||||||||||||    
T  20942181 gacatgcataattatatgtaggggatggagttcgaaccccagacacctcacttattcaccttgaaaaaagtgaattcta 20942103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 294 - 392
Target Start/End: Complemental strand, 44487856 - 44487758
Alignment:
Q  294 atagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    |||||| |||||| |  |||||||||| ||||||| | ||| ||||| ||||||||   |||||||||||||||| ||| ||||| |||||||||||||    
T  44487856 atagctcagttgatagggacatgcattattatatgcaagggccggagttcgaaccccggacatcccacttattcaccttaaaaaaggtgaattctaacc 44487758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 5807808 - 5807759
Alignment:
Q  342 tcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaac 391  Q
    |||||||||| |||||||||||||||| ||||||||| ||||||||||||    
T  5807808 tcgaaccctagacatcccacttattcaccttgaaaaaggtgaattctaac 5807759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 14307766 - 14307688
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||||||||||||| ||||||||  | ||||||||   ||| ||||||||||||  || ||||||||||||||||    
T  14307766 gacatgcattgttatatgcaggggtcgaggttcgaaccccgaacaccccacttattcactttaaaaaaagtgaattcta 14307688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 390
Target Start/End: Complemental strand, 16538572 - 16538474
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaa 390  Q
    ||||| ||||||||||||||| ||||||||||||||||||  |||||   ||||| || | |||   ||||||||||| ||||||||||| || |||||    
T  16538572 gcataacttagttgacaaagatatgcattgttatatgtagatgtcgggattcgaatcccaaacacttcacttattcatgttgaaaaaagtaaactctaa 16538474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 386
Target Start/End: Complemental strand, 31089088 - 31088994
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaatt 386  Q
    ||||| || |||||| | ||||||||||| || |||||||||||||||| | ||| ||   |||||||||||||||   ||||||||||||||||    
T  31089088 gcatacctcagttgatagagacatgcattattttatgtaggggtcggagtttgaatcccgaacatcccacttattcgctttgaaaaaagtgaatt 31088994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 389
Target Start/End: Original strand, 32288383 - 32288477
Alignment:
Q  295 tagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    ||||| |||||||| | ||||||||| |||||||||||| |||| | |||||||    ||| |||||||||||| |||||||||| | |||||||    
T  32288383 tagctcagttgacagaaacatgcattattatatgtagggatcggggttcgaacctcggacaccccacttattcaccttgaaaaaaataaattcta 32288477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 380
Target Start/End: Complemental strand, 44132652 - 44132566
Alignment:
Q  294 atagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaag 380  Q
    |||||| ||||| || ||||||||||||||||||| || |||||| | |||||| | | ||| |||  |||||||||||||||||||    
T  44132652 atagctcagttggcagagacatgcattgttatatgcagaggtcggggttcgaactccagacaccccgtttattcatcttgaaaaaag 44132566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 389
Target Start/End: Original strand, 18089733 - 18089830
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||| ||||| || ||||||||||| |  |||| ||||| | ||| |||||||| | ||| | |||||||||| ||||||||| ||||||||||    
T  18089733 gcatagctcagttggcagagacatgcattatactatgcaggggccagagttcgaaccccagacacctcacttattcaccttgaaaaacgtgaattcta 18089830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 386
Target Start/End: Original strand, 407505 - 407576
Alignment:
Q  314 atgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaatt 386  Q
    ||||||||||||||| | ||||||||| ||||||||   ||| |||| ||||||| |||||||||||||||||    
T  407505 atgcattgttatatgcaagggtcggagttcgaaccc-cgacaccccatttattcagcttgaaaaaagtgaatt 407576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 386
Target Start/End: Complemental strand, 4529836 - 4529760
Alignment:
Q  310 agacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaatt 386  Q
    ||||||||||| ||||||| ||||||||||| |||||| |   ||| ||||||||||||  |||||||| |||||||    
T  4529836 agacatgcattattatatgcaggggtcggagttcgaactccgaacaccccacttattcactttgaaaaaggtgaatt 4529760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 392
Target Start/End: Original strand, 11727327 - 11727435
Alignment:
Q  282 cgtgagctatgcatagcttagttgacaaagaca-tgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaag 380  Q
    |||||||||||||||||| ||||| ||  |||| || ||| ||||||||||||  ||||| |||||||| | ||| |||||||||||| |||  | ||||    
T  11727327 cgtgagctatgcatagctgagttggcag-gacaatgtattattatatgtagggaccggagttcgaaccccaaacaccccacttattcacctt--ataaag 11727423  T
Q  381 tgaattctaacc 392  Q
    ||||||||||||    
T  11727424 tgaattctaacc 11727435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 1244592 - 1244670
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    ||||| ||||| |||||| |||||| || | ||||||||   ||| |||||||||||| ||||||||| ||||||||||    
T  1244592 gacatacattgctatatgcaggggtgggggttcgaaccccggacaccccacttattcaccttgaaaaaggtgaattcta 1244670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 389
Target Start/End: Original strand, 12206501 - 12206599
Alignment:
Q  291 tgcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    ||||||||||||||| ||   |||| |||| ||||||  ||||||||| | ||||||||   ||| ||| |||||||| ||||||||| ||||||||||    
T  12206501 tgcatagcttagttggcaggaacatacattattatattcaggggtcggggttcgaaccccgaacaccccgcttattcaccttgaaaaaggtgaattcta 12206599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 18054974 - 18055012
Alignment:
Q  297 gcttagttgacaaagacatgcattgttatatgtaggggt 335  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  18054974 gcttagttgatagagacatgcattgttatatgtaggggt 18055012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 392
Target Start/End: Original strand, 6496462 - 6496542
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    ||||||||||||||||||||||| || | | |||||| | ||||| || ||||| ||  ||| |||||||||||||||||||    
T  6496462 gacatgcattgttatatgtagggttcagtgttcgaactccatacaccctactta-tccccttaaaaaaagtgaattctaacc 6496542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 389
Target Start/End: Original strand, 22355087 - 22355184
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||| ||||| ||| ||||||||||||||| || |||||| |    |||||| | | ||| |||||||||||| |||| |||| ||||||||||    
T  22355087 gcatagctcagttggcaaggacatgcattgttatgtgcaggggttgagtttcgaactccagacaccccacttattcaccttgcaaaaggtgaattcta 22355184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 390
Target Start/End: Original strand, 32944067 - 32944164
Alignment:
Q  293 catagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaa 390  Q
    ||||||| ||||| ||  |||||||||| ||||||| |||  |||||| || ||| |   ||| | |||||||||| |||||||||||||||||||||    
T  32944067 catagctcagttggcatggacatgcattattatatgcaggaatcggagttcaaactccgaacacctcacttattcaccttgaaaaaagtgaattctaa 32944164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 36277793 - 36277736
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccc 349  Q
    |||||||| ||||| ||  ||||||||||||||||||||||||| | || ||||||||    
T  36277793 gcatagctcagttggcagtgacatgcattgttatatgtaggggttgaagttcgaaccc 36277736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 2395000 - 2394964
Alignment:
Q  356 tcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  2395000 tcccacttattcaccttgaaaaaggtgaattctaacc 2394964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 292 - 408
Target Start/End: Complemental strand, 11246585 - 11246469
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaac 391  Q
    |||||||| ||||| ||  |||||||||||||||||| ||||||||| | || ||||| | |||||||||||||||| ||||||||| |||||||||| |    
T  11246585 gcatagctcagttggcagggacatgcattgttatatgcaggggtcggggctcaaaccccagacatcccacttattcagcttgaaaaaggtgaattctagc 11246486  T
Q  392 cgctggattacttaaca 408  Q
    | || || |||||||||    
T  11246485 cactagactacttaaca 11246469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 31556841 - 31556919
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||||||||||||| ||||||||||| ||||||||   ||| |||||||||||| ||||||||  ||||||||||    
T  31556841 gacatgcattgttatatgcaggggtcggagttcgaaccccggacaccccacttattcaccttgaaaagggtgaattcta 31556919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 310 - 389
Target Start/End: Original strand, 4985781 - 4985858
Alignment:
Q  310 agacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||||||||||||| |||||||||| | |||||||||  ||| || |||||||||||||  |||||||||||||||    
T  4985781 agacatgcattgttatatataggggtcggggttcgaaccctggacaccctacttattcatctt--aaaaagtgaattcta 4985858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 392
Target Start/End: Original strand, 13862129 - 13862228
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaac 391  Q
    |||||| | ||||||||  || ||||||||||||||| ||||||||||| ||||||||   ||| ||||||||||| |||||||||| | ||||||||||    
T  13862129 gcatagttcagttgacatggatatgcattgttatatgcaggggtcggagttcgaaccc-ggacaccccacttattcttcttgaaaaaggagaattctaac 13862227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 391
Target Start/End: Complemental strand, 42553231 - 42553133
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaac 391  Q
    |||||||| ||||||||| |||||||||||||||||| | ||||||| | ||||||||   |||   |||||||||| ||||||||| ||||||||||||    
T  42553231 gcatagctcagttgacaacgacatgcattgttatatgca-gggtcggggttcgaaccccggacactacacttattcaccttgaaaaatgtgaattctaac 42553133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 342 - 392
Target Start/End: Original strand, 29561702 - 29561752
Alignment:
Q  342 tcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||||||    
T  29561702 tcgaaccccagacatcccacttattcatcttgaaaaaggtgaattctaacc 29561752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 292 - 386
Target Start/End: Original strand, 38040270 - 38040363
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaatt 386  Q
    |||||||| ||||| ||  |||||||||||||||||| ||||||||  | |||||| |   |||||||||||||||||||||||||| |||||||    
T  38040270 gcatagctcagttggcagggacatgcattgttatatgcaggggtcgaggttcgaactcgg-acatcccacttattcatcttgaaaaaggtgaatt 38040363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 312 - 406
Target Start/End: Original strand, 39684262 - 39684356
Alignment:
Q  312 acatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaaccgctggattacttaa 406  Q
    ||||||||||||||||||||||||| |   |  |||||   |||||||||||||||| ||| ||||| ||||||||||||| || ||||||||||    
T  39684262 acatgcattgttatatgtaggggtcaggatttaaaccccggacatcccacttattcaccttaaaaaaggtgaattctaaccactagattacttaa 39684356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 386
Target Start/End: Complemental strand, 32253009 - 32252916
Alignment:
Q  293 catagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaatt 386  Q
    ||||||| |||||| || |||||||||| ||||||||||||||||| | |||||||| | ||| || | |||||||  |||||||| |||||||    
T  32253009 catagctcagttgataaggacatgcattattatatgtaggggtcggggttcgaaccccagacacccaatttattcactttgaaaaatgtgaatt 32252916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 388
Target Start/End: Original strand, 17557043 - 17557129
Alignment:
Q  301 agttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattct 388  Q
    ||||| || ||||||||||||||||||||||||||||| | || |||||   ||| |||||||||||| ||| |||||||| ||||||    
T  17557043 agttggcagagacatgcattgttatatgtaggggtcggggttcaaaccc-ggacaccccacttattcaccttaaaaaaagttaattct 17557129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 389
Target Start/End: Complemental strand, 37986936 - 37986861
Alignment:
Q  314 atgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    ||||||| ||||||| || |||||||| | ||||||   |||||||||||||||| ||||||||| ||||||||||    
T  37986936 atgcattattatatgcagaggtcggagtttgaaccccggacatcccacttattcaccttgaaaaaggtgaattcta 37986861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 372
Target Start/End: Original strand, 18175241 - 18175291
Alignment:
Q  322 ttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatctt 372  Q
    ||||||||||||||||| | |||||||| | ||||||||||||||||||||    
T  18175241 ttatatgtaggggtcggggttcgaaccccagacatcccacttattcatctt 18175291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 392
Target Start/End: Original strand, 20186889 - 20186968
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    |||||||||| ||||||| ||||||||| | |  ||||| | ||| |||||||||||| ||||||||||||||||| |||||    
T  20186889 gacatgcattattatatgcaggggtcggggtt--aaccccagacaccccacttattcaccttgaaaaaagtgaattataacc 20186968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 41539337 - 41539415
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||||  ||||||| |||||| | || |||||||| | ||| |||||||||| ||||||||||| ||||||||||    
T  41539337 gacatgcataattatatgcaggggttgtagttcgaaccccagacaccccacttattaatcttgaaaaaggtgaattcta 41539415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 311 - 392
Target Start/End: Complemental strand, 3536008 - 3535927
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    |||||||||||||||||  ||| | ||| | ||||||||   ||| |||||||||||| ||| |||||||||||||||||||    
T  3536008 gacatgcattgttatatacaggagccggggttcgaaccccggacaccccacttattcaccttaaaaaaagtgaattctaacc 3535927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 311 - 392
Target Start/End: Original strand, 28768620 - 28768701
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    |||||||||||| ||||| | ||||| ||| ||||| || | ||||| ||||||| || ||||||||| |||||||||||||    
T  28768620 gacatgcattgtcatatgcaagggtcagagttcgaatcccaaacatctcacttatccaccttgaaaaaggtgaattctaacc 28768701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 392
Target Start/End: Complemental strand, 18102040 - 18101940
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaac 391  Q
    ||||||||  ||||| | ||||||| ||| ||||||| ||||| ||||| |||||||| | ||| |||||||||||| ||| ||||   |||||||||||    
T  18102040 gcatagctcggttgatagagacatgtattattatatgcaggggccggagttcgaaccccagacaccccacttattcaccttaaaaatgatgaattctaac 18101941  T
Q  392 c 392  Q
    |    
T  18101940 c 18101940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 392
Target Start/End: Complemental strand, 38129080 - 38129004
Alignment:
Q  316 gcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    ||||||||||||| ||||||||| | |||||||||  |||  ||||||||||| ||||||||   ||||||||||||    
T  38129080 gcattgttatatgcaggggtcggggttcgaaccctggacactccacttattcaccttgaaaatgatgaattctaacc 38129004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 378
Target Start/End: Complemental strand, 8018688 - 8018621
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaa 378  Q
    |||||||||| |||||||||| |||||||| ||||| |||  ||| ||||||||||| || |||||||    
T  8018688 gacatgcattattatatgtagaggtcggagttcgaatcctgaacaccccacttattcttcctgaaaaa 8018621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 392
Target Start/End: Complemental strand, 17137937 - 17137858
Alignment:
Q  313 catgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    |||||||| ||||||| |||| |||| | ||||||||   |||  ||||||||||| ||||||||| |||||||||||||    
T  17137937 catgcattattatatgcagggatcggggttcgaacccccgacactccacttattcaccttgaaaaacgtgaattctaacc 17137858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 292 - 378
Target Start/End: Original strand, 10106634 - 10106720
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaa 378  Q
    |||||||| ||||| ||  ||||| |||| ||||||||||||| |  || ||||||||   ||| ||||||||||||||||||||||    
T  10106634 gcatagctcagttggcagggacatccattattatatgtaggggccaaagttcgaaccccggacaccccacttattcatcttgaaaaa 10106720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 392
Target Start/End: Complemental strand, 22687938 - 22687872
Alignment:
Q  326 atgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    |||||||||| |||| | ||||||   ||| |||||||||||| ||||||||| |||||||||||||    
T  22687938 atgtaggggttggagtttgaaccccgaacaccccacttattcaccttgaaaaaggtgaattctaacc 22687872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 392
Target Start/End: Original strand, 18535985 - 18536018
Alignment:
Q  359 cacttattcatcttgaaaaaagtgaattctaacc 392  Q
    |||||||||| |||||||||||||||||||||||    
T  18535985 cacttattcaccttgaaaaaagtgaattctaacc 18536018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 389
Target Start/End: Original strand, 27006365 - 27006441
Alignment:
Q  313 catgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    ||||||||||||||||  |||||||| | |||||| |   |||  ||||||||||| ||||||||| ||||||||||    
T  27006365 catgcattgttatatgctggggtcggggttcgaactccggacactccacttattcaccttgaaaaaggtgaattcta 27006441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 292 - 391
Target Start/End: Original strand, 33533207 - 33533306
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaac 391  Q
    ||||| || ||||| || |||||||||||||||||||||| ||| || | ||||||| || |||||||||||||||| ||| ||||||||||||||||||    
T  33533207 gcataactcagttggcagagacatgcattgttatatgtagtggttggggttcgaaccatagacatcccacttattcaccttaaaaaaagtgaattctaac 33533306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 301 - 395
Target Start/End: Complemental strand, 4045716 - 4045622
Alignment:
Q  301 agttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaaccgct 395  Q
    ||||||||  |||||||||||||||||| ||||||||  | ||||||     ||| |||||||||||||||||||||| ||||||||||||||||    
T  4045716 agttgacagggacatgcattgttatatgcaggggtcgaggttcgaacttcggacaccccacttattcatcttgaaaaaggtgaattctaaccgct 4045622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 389
Target Start/End: Complemental strand, 21249080 - 21248984
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||| |||||||| ||||||| ||| ||||||| ||||| ||| | |||||||||  ||| |||||||||||| ||||||||| ||||||||||    
T  21249080 gcatagctcagttgacagagacatg-attattatatgcaggggccggggttcgaaccctgaacaccccacttattcaccttgaaaaaggtgaattcta 21248984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 389
Target Start/End: Original strand, 23237366 - 23237463
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||| ||||| ||  |||||||||| ||||||||||||||||||| |||||| |   ||||||||| ||||||  |||||||| ||||||||||    
T  23237366 gcatagctcagttggcagggacatgcattattatatgtaggggtcggagttcgaactccggacatcccacatattcacgttgaaaaaggtgaattcta 23237463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 389
Target Start/End: Original strand, 51017796 - 51017890
Alignment:
Q  294 atagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||| ||||| ||  |||||||||||||||||| ||| ||||||| ||||||||   ||| ||||||||||||  |||||||||||||||||||    
T  51017796 atagctcagttggcagggacatgcattgttatatgcaggagtcggagttcgaaccc-ggacaccccacttattcactttgaaaaaagtgaattcta 51017890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 330 - 392
Target Start/End: Original strand, 36842204 - 36842266
Alignment:
Q  330 aggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    ||||||||| | ||||||||  |||||||||||||||||  ||||||||||||||||||||||    
T  36842204 aggggtcggggttcgaaccccgtacatcccacttattcactttgaaaaaagtgaattctaacc 36842266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 404
Target Start/End: Complemental strand, 3461815 - 3461702
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctataca-tcccacttattcatcttgaaaaaagtgaattctaa 390  Q
    ||||| || ||||||||  ||||||||||||||||||||||||| || | ||||||||   |||  |||| |||||||| ||||| || |||||||||||    
T  3461815 gcataactcagttgacagggacatgcattgttatatgtaggggttggggttcgaaccccgaacacccccatttattcattttgaataaggtgaattctaa 3461716  T
Q  391 ccgctggattactt 404  Q
    ||||| || |||||    
T  3461715 ccgctagactactt 3461702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 392
Target Start/End: Original strand, 28951890 - 28951970
Alignment:
Q  312 acatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    ||||||||| ||||||| ||||||| | | ||||||||   ||| |||||||||||| ||||||||| |||||||||||||    
T  28951890 acatgcattattatatgcaggggtcagggttcgaaccccgaacaccccacttattcaccttgaaaaatgtgaattctaacc 28951970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 390
Target Start/End: Complemental strand, 42665994 - 42665918
Alignment:
Q  314 atgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaa 390  Q
    ||||||||||| ||| ||||||||||| |||||| |   ||| |||||||||||| |||||||||| ||||||||||    
T  42665994 atgcattgttaaatgcaggggtcggagttcgaactccggacaccccacttattcaccttgaaaaaaatgaattctaa 42665918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 311 - 386
Target Start/End: Original strand, 16999951 - 17000026
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaatt 386  Q
    |||||||||| ||||||||||||| ||||| |||||| | | ||| ||||| |||||||||||||||  |||||||    
T  16999951 gacatgcattattatatgtaggggccggagttcgaactccagacaccccacatattcatcttgaaaagggtgaatt 17000026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 377
Target Start/End: Complemental strand, 34407162 - 34407096
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaa 377  Q
    |||||||||| ||||||| |||||| || | |||||||| | ||| |||||||||||||||||||||    
T  34407162 gacatgcattattatatgcaggggttggggttcgaaccccagacaccccacttattcatcttgaaaa 34407096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 48894106 - 48894159
Alignment:
Q  295 tagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaacc 348  Q
    ||||| |||||||||  |||||||||||||||| |||||||||||| |||||||    
T  48894106 tagctcagttgacaagaacatgcattgttatatataggggtcggagttcgaacc 48894159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 24890077 - 24890133
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaacc 348  Q
    ||||| || ||||||||| ||||||||||||||||||||||||| || | |||||||    
T  24890077 gcataactcagttgacaaggacatgcattgttatatgtaggggttggggttcgaacc 24890133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 389
Target Start/End: Original strand, 32080080 - 32080156
Alignment:
Q  313 catgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||| ||| ||||||||| ||||||| | ||||||||   ||| |||||||||||| ||||||||| ||||||||||    
T  32080080 catgaattattatatgtatgggtcggggttcgaaccccgaacaccccacttattcaccttgaaaaaggtgaattcta 32080156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 378
Target Start/End: Complemental strand, 4478439 - 4478373
Alignment:
Q  312 acatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaa 378  Q
    ||||||||| ||||||| ||||||||| | ||||| ||   |||||||||||||||||||| |||||    
T  4478439 acatgcattattatatgcaggggtcggggttcgaatcccggacatcccacttattcatctttaaaaa 4478373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 292 - 386
Target Start/End: Complemental strand, 6128702 - 6128609
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaatt 386  Q
    ||||| || |||||||||| | ||||||||||||||| || ||| || | |||||||||| ||||  || ||| ||||||||||||| |||||||    
T  6128702 gcataactcagttgacaaaaatatgcattgttatatgcagtggtggg-gttcgaaccctaaacatatcaattagtcatcttgaaaaaggtgaatt 6128609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 372
Target Start/End: Complemental strand, 13616143 - 13616085
Alignment:
Q  314 atgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatctt 372  Q
    ||||||| ||||||||||||||||||| |||||||    ||| ||||||||||||||||    
T  13616143 atgcattattatatgtaggggtcggagttcgaacctcggacaccccacttattcatctt 13616085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 372
Target Start/End: Original strand, 15498232 - 15498290
Alignment:
Q  314 atgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatctt 372  Q
    ||||||| ||||||||||||| ||||| ||||||||   |||| |||||||||||||||    
T  15498232 atgcattattatatgtaggggccggagttcgaaccccggacattccacttattcatctt 15498290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 372
Target Start/End: Original strand, 23820655 - 23820713
Alignment:
Q  314 atgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatctt 372  Q
    ||||||| ||||||| ||||| ||||| |||||||| | ||| ||||||||||||||||    
T  23820655 atgcattattatatgcaggggccggagttcgaaccccagacaccccacttattcatctt 23820713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 292 - 389
Target Start/End: Original strand, 38507652 - 38507747
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||| ||||| ||  |||||||||| ||||||  ||||||||| | || ||||||| ||| |||||||||||| ||| |||||  |||||||||    
T  38507652 gcatagctcagttggcagggacatgcattattatat--aggggtcggggttcaaaccctaaacaccccacttattcaccttaaaaaatctgaattcta 38507747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 368
Target Start/End: Original strand, 43774211 - 43774265
Alignment:
Q  314 atgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattca 368  Q
    ||||||||||||||| ||||||||| | |||||||| | ||| ||||||||||||    
T  43774211 atgcattgttatatgcaggggtcggggttcgaaccccagacaccccacttattca 43774265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 392
Target Start/End: Complemental strand, 6054297 - 6054216
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    |||||| ||||||| ||| || |||||||| |||||| |   ||| | |||||||||| ||||||||| |||||||||||||    
T  6054297 gacatgtattgttagatgcagaggtcggagttcgaactccgaacacctcacttattcaccttgaaaaaggtgaattctaacc 6054216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 389
Target Start/End: Original strand, 19137643 - 19137720
Alignment:
Q  312 acatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    ||||||||||||||||| ||||| ||  | |||||||| | ||| |||| ||||||  ||||||||||| ||||||||    
T  19137643 acatgcattgttatatgcaggggccgaggttcgaaccccagacaccccatttattctccttgaaaaaagagaattcta 19137720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 392
Target Start/End: Original strand, 51493621 - 51493702
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    ||||||||||||| |||| | ||||||| | ||||||||   ||  |||||||| ||| || ||||||||||||||||||||    
T  51493621 gacatgcattgttttatgcaagggtcggggttcgaaccccgaacgccccacttaatcacctcgaaaaaagtgaattctaacc 51493702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 391
Target Start/End: Original strand, 55318040 - 55318120
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaac 391  Q
    |||||| ||||||| |||||||||| ||   ||||||||   ||| ||||||||||||  |||||||||||||||| ||||    
T  55318040 gacatgtattgttaaatgtaggggttgggattcgaaccccggacaccccacttattcactttgaaaaaagtgaattttaac 55318120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 293 - 389
Target Start/End: Complemental strand, 10020559 - 10020463
Alignment:
Q  293 catagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    ||||||| ||||||||  |||||||||||||||||| |||||| || | ||||||||   ||| |||||||||||||||||||||| ||||||||||    
T  10020559 catagctcagttgacagggacatgcattgttatatgcaggggttggggttcgaaccccgaacaacccacttattcatcttgaaaaaggtgaattcta 10020463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 390
Target Start/End: Complemental strand, 41012653 - 41012573
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaa-gtgaattctaa 390  Q
    |||||||||||||||||||||||| ||||| ||||||||   |||||||||||||||| ||| |||||| |||||||||||    
T  41012653 gacatgcattgttatatgtaggggccggagctcgaaccccgaacatcccacttattcaccttaaaaaaaggtgaattctaa 41012573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 293 - 392
Target Start/End: Original strand, 16814702 - 16814801
Alignment:
Q  293 catagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    ||||||| ||||| |||  ||||||||| ||||||||||||||||| | |||||||| | |||  |||||||||||  |||||||| |||||||||||||    
T  16814702 catagctcagttggcaagaacatgcattattatatgtaggggtcggggttcgaaccccagacactccacttattcactttgaaaaatgtgaattctaacc 16814801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 391
Target Start/End: Complemental strand, 7162737 - 7162660
Alignment:
Q  314 atgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaac 391  Q
    ||||||||||||||| ||||||||| | |||||| ||  | || ||||||||||||||||||||| ||||||||||||    
T  7162737 atgcattgttatatgcaggggtcggggttcgaactctgaatattccacttattcatcttgaaaaaggtgaattctaac 7162660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 5773152 - 5773232
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccc--tatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||||||||||||||||||||||  | ||||||||   | |||||||||||||||| ||||||||| ||| ||||||    
T  5773152 gacatgcattgttatatgtaggggtcgaggttcgaaccccggacacatcccacttattcaccttgaaaaaggtggattcta 5773232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 391
Target Start/End: Original strand, 11808061 - 11808142
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatctt-gaaaaaagtgaattctaac 391  Q
    |||||||||||||||||| ||||||||| | ||||||||   ||| |||||||||||| ||| |||||| ||||||||||||    
T  11808061 gacatgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattcaccttagaaaaacgtgaattctaac 11808142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 392
Target Start/End: Original strand, 44409224 - 44409304
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    |||||||||| ||||||| | ||||||| | |||||||| | ||| |||||||||||| ||||||||| |||||||||||||    
T  44409224 gacatgcattattatatgcaagggtcggggttcgaacccga-acaccccacttattcaccttgaaaaaggtgaattctaacc 44409304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 390
Target Start/End: Original strand, 47355835 - 47355912
Alignment:
Q  314 atgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaag-tgaattctaa 390  Q
    ||||||||||||||| ||||| ||| | |||||||| | ||||||||||||||||| || ||||||| ||||||||||    
T  47355835 atgcattgttatatgcaggggccggggttcgaaccccagacatcccacttattcattttaaaaaaagatgaattctaa 47355912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 294 - 389
Target Start/End: Complemental strand, 32309237 - 32309142
Alignment:
Q  294 atagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    ||||||| |||| ||  |||||||||||||||||| ||||||||||| ||||| |  | ||| |||| ||||||| ||| ||||| ||||||||||    
T  32309237 atagcttggttggcagggacatgcattgttatatgcaggggtcggagttcgaatctcagacaccccagttattcaccttaaaaaatgtgaattcta 32309142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 373
Target Start/End: Complemental strand, 42260099 - 42260041
Alignment:
Q  314 atgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttg 373  Q
    ||||||| |||||| |||||||||||| |||||||| | |||||||||||||||||||||    
T  42260099 atgcattattatatataggggtcggagttcgaacccca-acatcccacttattcatcttg 42260041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 311 - 404
Target Start/End: Original strand, 32814850 - 32814943
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaaccgctggattactt 404  Q
    |||||||||| ||||||| ||||||||||| ||||| ||   ||| ||||||||||||| |  ||||| ||||||| ||||| ||||| |||||    
T  32814850 gacatgcattattatatgcaggggtcggagttcgaatcccggacaccccacttattcatataaaaaaaggtgaattttaaccactggactactt 32814943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 389
Target Start/End: Complemental strand, 42181559 - 42181471
Alignment:
Q  301 agttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    ||||||||| |||||||||||||||||| ||||| || || || ||||| | ||| |||||||||| | ||| |||||  |||||||||    
T  42181559 agttgacaaggacatgcattgttatatgcaggggccgaagttcaaaccccaaacaccccacttattgaccttaaaaaagatgaattcta 42181471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 391
Target Start/End: Original strand, 25304202 - 25304280
Alignment:
Q  312 acatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaac 391  Q
    ||||| ||||||||||| |||||| |||| | |||||  ||||| ||||||||| |||||| ||||| ||||||||||||    
T  25304202 acatgaattgttatatgcaggggttggagtttgaacctcataca-cccacttatccatcttaaaaaaggtgaattctaac 25304280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 353 - 391
Target Start/End: Complemental strand, 1773000 - 1772962
Alignment:
Q  353 acatcccacttattcatcttgaaaaaagtgaattctaac 391  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  1773000 acattccacttattaatcttgaaaaaagtgaattctaac 1772962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 386
Target Start/End: Complemental strand, 19687311 - 19687282
Alignment:
Q  357 cccacttattcatcttgaaaaaagtgaatt 386  Q
    ||||||||||||||||||||||||||||||    
T  19687311 cccacttattcatcttgaaaaaagtgaatt 19687282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 22660767 - 22660819
Alignment:
Q  314 atgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttatt 366  Q
    ||||||||||||||||||||| ||| | |||||||| | ||| ||||||||||    
T  22660767 atgcattgttatatgtaggggccggggttcgaaccccaaacaccccacttatt 22660819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 392
Target Start/End: Complemental strand, 23470571 - 23470492
Alignment:
Q  312 acatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    ||||| ||| |||||||||||| | | || ||||||||   |||||||| ||||||||||||||||| |||| ||||||||    
T  23470571 acatgtattattatatgtagggctag-agttcgaaccccggacatcccatttattcatcttgaaaaaggtgagttctaacc 23470492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 345 - 389
Target Start/End: Complemental strand, 26734309 - 26734265
Alignment:
Q  345 aaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    ||||||| ||| |||||||||||| ||||||||| ||||||||||    
T  26734309 aaccctagacaccccacttattcaccttgaaaaaggtgaattcta 26734265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 311 - 392
Target Start/End: Complemental strand, 14011110 - 14011029
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    |||||||||||||||||| ||||| ||||| |||||||    |||||||||||||||||||| ||||| |||||||||||||    
T  14011110 gacatgcattgttatatgcaggggccggagttcgaacctcggacatcccacttattcatcttaaaaaatgtgaattctaacc 14011029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 313 - 391
Target Start/End: Complemental strand, 26773772 - 26773694
Alignment:
Q  313 catgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaac 391  Q
    |||||||||||||||| || |||||||| ||||||||   |||| ||||||||||||||| ||||| ||||||||||||    
T  26773772 catgcattgttatatgcagaggtcggagttcgaaccccgaacattccacttattcatcttaaaaaatgtgaattctaac 26773694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 311 - 392
Target Start/End: Complemental strand, 16808433 - 16808350
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggt-cgaaccctatacatcccacttattcatctt-gaaaaaagtgaattctaacc 392  Q
    |||||||||| ||||||| |||||| || ||| ||||||| ||||| |||||||||||| |||  |||||||||||||||||||    
T  16808433 gacatgcattattatatgcaggggtggggggttcgaaccccatacagcccacttattcaccttaaaaaaaagtgaattctaacc 16808350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 311 - 386
Target Start/End: Original strand, 28979049 - 28979124
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaatt 386  Q
    |||||||||||||||||||||||||||||  ||||||||   ||| | |||||||||| ||| ||||| |||||||    
T  28979049 gacatgcattgttatatgtaggggtcggaattcgaaccccggacacctcacttattcaccttaaaaaatgtgaatt 28979124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 292 - 395
Target Start/End: Complemental strand, 41531313 - 41531210
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaac 391  Q
    |||||||| ||||  ||| ||||| |||||||||||||| ||||  ||| |||||| |   ||||| | |||||||| |||||||||| |||||||||||    
T  41531313 gcatagctcagttagcaacgacatacattgttatatgtatgggttagagttcgaactccggacatctcccttattcaccttgaaaaaattgaattctaac 41531214  T
Q  392 cgct 395  Q
    ||||    
T  41531213 cgct 41531210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 22847334 - 22847256
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||||||||||||| ||||||||  | |||||||| | ||| | |||||||||| ||| ||||| ||||||||||    
T  22847334 gacatgcattgttatatgcaggggtcgaggttcgaaccccacacacctcacttattcaccttaaaaaaggtgaattcta 22847256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 366
Target Start/End: Complemental strand, 37288197 - 37288123
Alignment:
Q  293 catagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccct-atacatcccacttatt 366  Q
    ||||||||||||  || |||||||||| ||||||||||||||| || | ||||||||| | ||||||||||||||    
T  37288197 catagcttagttagcagagacatgcatcgttatatgtaggggttggggttcgaaccctcagacatcccacttatt 37288123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 389
Target Start/End: Original strand, 18577117 - 18577214
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    ||||| || ||||||||  |||||| ||||||||||| ||||||||| | || ||||| | ||||  |||||||||| ||||||||| |||| |||||    
T  18577117 gcataactcagttgacagggacatgtattgttatatgcaggggtcggggttcaaaccccaaacatttcacttattcaccttgaaaaaggtgagttcta 18577214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 392
Target Start/End: Complemental strand, 220453 - 220353
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaac 391  Q
    |||||||| ||||| ||  |||||||| ||||||||| || |||| | | ||||| ||   ||| |||||||||||| ||||||||| ||||||||||||    
T  220453 gcatagctcagttggcagggacatgcaatgttatatgcagaggtcagggttcgaatcccggacaccccacttattcaccttgaaaaaggtgaattctaac 220354  T
Q  392 c 392  Q
    |    
T  220353 c 220353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 392
Target Start/End: Complemental strand, 689608 - 689508
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaac 391  Q
    |||||||| ||||| ||  |||||||| ||||||||| || |||| | | ||||| ||   ||| |||||||||||| ||||||||| ||||||||||||    
T  689608 gcatagctcagttggcagggacatgcaatgttatatgcagaggtcagggttcgaatcccggacaccccacttattcaccttgaaaaaggtgaattctaac 689509  T
Q  392 c 392  Q
    |    
T  689508 c 689508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 392
Target Start/End: Complemental strand, 734076 - 733976
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaac 391  Q
    |||||||| ||||| ||  |||||||| ||||||||| || |||| | | ||||| ||   ||| |||||||||||| ||||||||| ||||||||||||    
T  734076 gcatagctcagttggcagggacatgcaatgttatatgcagaggtcagggttcgaatcccggacaccccacttattcaccttgaaaaaggtgaattctaac 733977  T
Q  392 c 392  Q
    |    
T  733976 c 733976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 392
Target Start/End: Complemental strand, 857972 - 857872
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaac 391  Q
    |||||||| ||||| ||  |||||||| ||||||||| || |||| | | ||||| ||   ||| |||||||||||| ||||||||| ||||||||||||    
T  857972 gcatagctcagttggcagggacatgcaatgttatatgcagaggtcagggttcgaatcccggacaccccacttattcaccttgaaaaaggtgaattctaac 857873  T
Q  392 c 392  Q
    |    
T  857872 c 857872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 392
Target Start/End: Complemental strand, 25139956 - 25139880
Alignment:
Q  314 atgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    ||||||| ||||||| ||||||||| | ||||||||   ||||||||||||||||||||  | || |||||||||||||    
T  25139956 atgcattattatatgcaggggtcggggttcgaaccccgaacatcccacttattcatctt--ataatgtgaattctaacc 25139880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 388
Target Start/End: Complemental strand, 6372692 - 6372599
Alignment:
Q  294 atagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattct 388  Q
    |||||| ||||| ||  |||||||||  ||||||| |||||  || | |||||||||||| | ||||||||||||| |||||||| |||||||||    
T  6372692 atagctcagttggcagggacatgcataattatatgcagggggtggggttcgaaccctata-accccacttattcatattgaaaaatgtgaattct 6372599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 372
Target Start/End: Complemental strand, 13537380 - 13537322
Alignment:
Q  314 atgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatctt 372  Q
    ||||||||||||||| ||| ||||| | |||||||| | ||| ||||||||||||||||    
T  13537380 atgcattgttatatgcaggtgtcggggttcgaaccccagacaccccacttattcatctt 13537322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 372
Target Start/End: Complemental strand, 13626928 - 13626870
Alignment:
Q  314 atgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatctt 372  Q
    ||||||||||||||| ||| ||||| | |||||||| | ||| ||||||||||||||||    
T  13626928 atgcattgttatatgcaggtgtcggggttcgaaccccagacaccccacttattcatctt 13626870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 390
Target Start/End: Original strand, 43554454 - 43554552
Alignment:
Q  293 catagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctat-acatcccacttattcatcttgaaaaaagtgaattctaa 390  Q
    ||||||| ||||| ||  ||||| ||||||||||||||||||| || | ||||||||  | |||||| |||||||||  ||||||||  ||||||||||    
T  43554454 catagctcagttggcagcgacatccattgttatatgtaggggttggggttcgaaccccctgacatcctacttattcactttgaaaaagatgaattctaa 43554552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 347
Target Start/End: Complemental strand, 32940403 - 32940350
Alignment:
Q  294 atagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaac 347  Q
    |||||| ||||||||  |||||||||||||||||  ||||||||||| ||||||    
T  32940403 atagctcagttgacagggacatgcattgttatatacaggggtcggagttcgaac 32940350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 389
Target Start/End: Original strand, 35779768 - 35779854
Alignment:
Q  301 agttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||| | ||||||||||||||||||| |||  |||| | |||||||    ||| ||||||||||||||||||||||  |||||||||    
T  35779768 agttgatagagacatgcattgttatatgcagg--tcggggttcgaacctaggacaccccacttattcatcttgaaaaagatgaattcta 35779854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 41793045 - 41792963
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatc----ccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||||||||||||| ||| | ||| | |||||||| |||||||    ||| ||||||||||||||||| || |||||||    
T  41793045 gacatgcattgttatatgcaggagccggggttcgaaccccatacatctcatccaattattcatcttgaaaaaggttaattcta 41792963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 389
Target Start/End: Original strand, 11900634 - 11900666
Alignment:
Q  357 cccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||||||||||||||||| ||||||||||    
T  11900634 cccacttattcatcttgaaaaaggtgaattcta 11900666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 404
Target Start/End: Original strand, 18123889 - 18123977
Alignment:
Q  317 cattgttatat-gtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaaccgctggattactt 404  Q
    ||||||||||| | |||||| || | ||||||| | |||| |||||||||||  ||| ||||| |||||||||| ||||| ||||||||    
T  18123889 cattgttatattgcaggggttggggttcgaaccatgtacaccccacttattctccttaaaaaaggtgaattctagccgctagattactt 18123977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 369
Target Start/End: Complemental strand, 36467953 - 36467897
Alignment:
Q  314 atgcattgttatatgtaggggtcggaggt-cgaaccctatacatcccacttattcat 369  Q
    ||||||| ||||||| ||||||||||| | ||||| || ||||||||||||||||||    
T  36467953 atgcattattatatgcaggggtcggagtttcgaactctgtacatcccacttattcat 36467897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 391
Target Start/End: Original strand, 36593217 - 36593297
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaac 391  Q
    |||||||||||||||||  || ||| || | ||||| | || |||||| ||||||||| ||| ||||| ||||||||||||    
T  36593217 gacatgcattgttatatacagaggttggggttcgaatcttagacatccaacttattcaccttaaaaaatgtgaattctaac 36593297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 12585631 - 12585553
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||||||||||||||| ||| ||||| ||||||||   ||| | |||||||||||||||||||| ||||||||||    
T  12585631 gacatgcattgttatatgtaagggccggagttcgaaccccgaacacctcacttattcatcttgaaaaaggtgaattcta 12585553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 392
Target Start/End: Original strand, 27921919 - 27922000
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    |||||||||| ||||||| ||||| ||| | |||||||| | ||||| |||||||||||||| ||||| |||||||||||||    
T  27921919 gacatgcattattatatgcaggggccggggttcgaaccccagacatctcacttattcatcttaaaaaatgtgaattctaacc 27922000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 389
Target Start/End: Original strand, 33359821 - 33359918
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||| ||||||||  ||||| |||||||||||| | ||||||  | |||||||||  ||| |||||||||||| ||||||||| ||||||||||    
T  33359821 gcatagctcagttgacatggacattcattgttatatgcaagggtcgaggttcgaaccctggacaccccacttattcaccttgaaaaaggtgaattcta 33359918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 395
Target Start/End: Complemental strand, 4419777 - 4419674
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaac 391  Q
    ||||| || ||||| || ||||||||||||||||||| ||||| ||| | || |||||   ||| | || ||||||| ||||||||||||||||||||||    
T  4419777 gcataactcagttgtcagagacatgcattgttatatgcaggggccggggttcaaacccagaacacctcatttattcaccttgaaaaaagtgaattctaac 4419678  T
Q  392 cgct 395  Q
    ||||    
T  4419677 cgct 4419674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 389
Target Start/End: Original strand, 20610743 - 20610840
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||| ||||| ||  |||||||||||||||||| ||||| ||| | |||||| |   |||||||||||||||| ||| ||||| ||||||||||    
T  20610743 gcatagctcagttggcagggacatgcattgttatatgcaggggccggggttcgaactccggacatcccacttattcaccttaaaaaaggtgaattcta 20610840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 392
Target Start/End: Complemental strand, 16336546 - 16336466
Alignment:
Q  312 acatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    |||||||||||||||||||||||| || | ||||||| |  |||||||  ||||| ||||||||||| ||||||| |||||    
T  16336546 acatgcattgttatatgtaggggttggggttcgaaccttgaacatcccgtttattgatcttgaaaaaggtgaattttaacc 16336466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 389
Target Start/End: Complemental strand, 49039536 - 49039439
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||| ||||| ||  |||||||||||||||||| ||||   || | ||||||||   ||| |||||||||||| ||||||||| ||||||||||    
T  49039536 gcatagctcagttggcagggacatgcattgttatatgcagggactggggttcgaaccccggacaccccacttattcaccttgaaaaaggtgaattcta 49039439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 389
Target Start/End: Complemental strand, 54854270 - 54854173
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||| ||||| ||  |||||||||  ||||||| |||||  || | ||||||||   ||||| |||||||||| ||||||||||||||||||||    
T  54854270 gcatagctcagttggcagggacatgcataattatatgcaggggctggggttcgaaccccggacatcacacttattcaccttgaaaaaagtgaattcta 54854173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 392
Target Start/End: Complemental strand, 18740999 - 18740907
Alignment:
Q  301 agttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctataca-tcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    ||||| || ||| ||||||| ||||||| ||||||||||| |||||||| | |||  |||||||||||| ||||||||| ||  |||||||||    
T  18740999 agttggcagagatatgcattattatatgcaggggtcggagttcgaaccccaaacacccccacttattcaccttgaaaaatgttcattctaacc 18740907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 49319397 - 49319485
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaag 380  Q
    |||||||| ||||| ||  |||||||||| ||||||| ||||||||| | || |||||   ||| |||||||||||| |||||||||||    
T  49319397 gcatagctcagttggcatggacatgcattattatatgcaggggtcggggttccaaccccggacaccccacttattcaccttgaaaaaag 49319485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 392
Target Start/End: Complemental strand, 21023441 - 21023343
Alignment:
Q  293 catagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    ||||||| ||||| || | ||||||||||||||||   ||||| || | ||||||||   ||| |||||||||||| ||||||||| |||||||||||||    
T  21023441 catagctcagttggcagaaacatgcattgttatatcc-ggggttggggttcgaacccccgacaccccacttattcaccttgaaaaaggtgaattctaacc 21023343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 389
Target Start/End: Original strand, 24039892 - 24039985
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||| ||||||||  |||||||||||||||||   |||||||| | ||||||||   ||| | |||||||||| ||||||||| ||||||||||    
T  24039892 gcatagctcagttgacag-gacatgcattgttatat---ggggtcggggttcgaaccccgaacacctcacttattcaccttgaaaaaggtgaattcta 24039985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 1589229 - 1589152
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||||||||||||| ||||||| |   ||||||||   |||||||| ||||||||||| ||||| ||||||||||    
T  1589229 gacatgcattgttatatgcaggggtcaggattcgaaccccggacatcccatttattcatctt-aaaaaggtgaattcta 1589152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 368
Target Start/End: Original strand, 11872899 - 11872953
Alignment:
Q  314 atgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattca 368  Q
    ||||||| ||||||||||||||||||| ||||||||   |||||| |||||||||    
T  11872899 atgcattattatatgtaggggtcggagttcgaaccccggacatcctacttattca 11872953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 20166339 - 20166417
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||||||||||||| ||||| ||  | |||||||| | | | |||||||||||  ||||||||||| ||||||||    
T  20166339 gacatgcattgttatatgcaggggccgaggttcgaaccccagataccccacttattctccttgaaaaaagagaattcta 20166417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 368
Target Start/End: Original strand, 38433337 - 38433391
Alignment:
Q  314 atgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattca 368  Q
    ||||||| ||||||||||| ||||||| |||||||| | ||| ||||||||||||    
T  38433337 atgcattattatatgtaggagtcggagttcgaaccccagacaccccacttattca 38433391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 368
Target Start/End: Complemental strand, 12820497 - 12820420
Alignment:
Q  292 gcatagcttagttgacaaagaca-tgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattca 368  Q
    |||||||| ||||| || ||||| |||||||||||||| ||||||||| | | |||||||  ||| ||||||||||||    
T  12820497 gcatagctcagttggcagagacaatgcattgttatatgcaggggtcggggttagaaccctggacaccccacttattca 12820420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 32048625 - 32048554
Alignment:
Q  317 cattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||| ||||||||||||||||| | | |||||| | ||| |||| ||||||| ||| ||||||||||||||||    
T  32048625 cattattatatgtaggggtcggggtttgaaccccagacagcccatttattca-ctttaaaaaagtgaattcta 32048554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 312 - 388
Target Start/End: Complemental strand, 14339798 - 14339722
Alignment:
Q  312 acatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattct 388  Q
    ||||||||||||||||| |||||| |  | |||||||||| ||||| |||||||| ||||||||||| |||||||||    
T  14339798 acatgcattgttatatgcaggggttgatgttcgaaccctagacatctcacttatttatcttgaaaaaggtgaattct 14339722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 292 - 390
Target Start/End: Complemental strand, 32541042 - 32540944
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaa 390  Q
    |||||| | ||||| || ||||||||||| |||||| ||| |||||||| |||||| | | | | |||||||||||| ||| |||||||||||||||||    
T  32541042 gcatagttcagttggcagagacatgcattattatatatagaggtcggagttcgaactccagataccccacttattcaccttaaaaaaagtgaattctaa 32540944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 392
Target Start/End: Original strand, 4844166 - 4844247
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    |||||||||||||||||| ||||||||| | |  ||||  | ||| | |||||||||| |||||||||||||||||||||||    
T  4844166 gacatgcattgttatatgcaggggtcggggtttaaacctcagacacctcacttattcaccttgaaaaaagtgaattctaacc 4844247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 292 - 398
Target Start/End: Original strand, 3029970 - 3030077
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaa-gtgaattctaa 390  Q
    ||||| |||||||| ||  |||||  ||| |||||||||| ||| |||| |||||||||  ||| |||||||||||| ||| |||||| |||||||||||    
T  3029970 gcataacttagttggcagggacataaattattatatgtagtggttggagttcgaaccctggacaccccacttattcaccttaaaaaaatgtgaattctaa 3030069  T
Q  391 ccgctgga 398  Q
    || |||||    
T  3030070 ccactgga 3030077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 312 - 379
Target Start/End: Original strand, 12341445 - 12341512
Alignment:
Q  312 acatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaa 379  Q
    |||| |||| ||||||||||||| |||||||||||||||| ||| |||| ||||||| ||| ||||||    
T  12341445 acatacattattatatgtaggggccggaggtcgaaccctaaacaccccagttattcaccttaaaaaaa 12341512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 26669731 - 26669653
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||||  |||||||||||||  || | |||||||| | ||| |||||||||||| ||||||||| ||||||||||    
T  26669731 gacatgcataattatatgtaggggctggggttcgaaccccagacaccccacttattcaccttgaaaaaggtgaattcta 26669653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 30833040 - 30833118
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||||||||||||| ||||||||| | ||||||||   ||| |||||||||||  ||||||||| | ||||||||    
T  30833040 gacatgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattctccttgaaaaaggagaattcta 30833118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 311 - 392
Target Start/End: Complemental strand, 7374122 - 7374041
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    |||||||||||||||||||| ||||||||| |||||| |   ||| |||||||||||| ||| |||||  | ||||||||||    
T  7374122 gacatgcattgttatatgtatgggtcggagttcgaactccgaacaccccacttattcaccttaaaaaatataaattctaacc 7374041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 317 - 406
Target Start/End: Complemental strand, 25165261 - 25165172
Alignment:
Q  317 cattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaaccgctggattacttaa 406  Q
    ||||||||||| |||| ||| ||| |||||||||  | |  ||||||||||| |||||||| |||| |||||||||||| || |||||||    
T  25165261 cattgttatatataggagtcagagttcgaaccctcaatactccacttattcaccttgaaaatagtgtattctaaccgctagactacttaa 25165172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 389
Target Start/End: Original strand, 34524879 - 34524976
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||| ||||| ||  |||||||||||||||||| ||||| ||| | |||| |||   ||| |||||||||||| || |||||| ||||||||||    
T  34524879 gcatagctcagttggcagggacatgcattgttatatgcaggggccggggttcgagccccgaacaccccacttattcacctggaaaaaggtgaattcta 34524976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 1488110 - 1488190
Alignment:
Q  310 agacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaa 390  Q
    ||||||||||||||||||| || |||||| | |||||||| | ||| |||| ||||||| ||| ||||  |||||||||||    
T  1488110 agacatgcattgttatatgcagaggtcggggttcgaaccccaaacaccccatttattcaccttaaaaatggtgaattctaa 1488190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 391
Target Start/End: Original strand, 8176000 - 8176100
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaa-gtgaattctaa 390  Q
    |||||||| |||||||| ||||||||||||||||||| ||||   || | |||||| |   ||| |||||||||||| ||| |||||| |||||||||||    
T  8176000 gcatagctcagttgacagagacatgcattgttatatgcagggactggtgttcgaactccgaacaccccacttattcaccttaaaaaaaggtgaattctaa 8176099  T
Q  391 c 391  Q
    |    
T  8176100 c 8176100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 19680320 - 19680242
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||||||||||||| ||| | ||| | ||||||||   ||| |||||||||||  ||||||||| ||||||||||    
T  19680320 gacatgcattgttatatgcaggagccggggttcgaaccccggacaccccacttattctccttgaaaaaggtgaattcta 19680242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 292 - 386
Target Start/End: Complemental strand, 30668275 - 30668181
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaatt 386  Q
    ||||| || ||||| || ||||||||||| ||||||| ||||||| ||| |||||||    ||| |||||||||||| ||| ||||| |||||||    
T  30668275 gcataactcagttggcatagacatgcattattatatgcaggggtcagagttcgaaccacgaacaccccacttattcaccttaaaaaatgtgaatt 30668181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 392
Target Start/End: Original strand, 10455766 - 10455847
Alignment:
Q  312 acatgcattgttatatgtaggggtcggaggtcgaaccctataca-tcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    ||||||||||||||||| ||||| ||| | ||||||||   |||  |||||||||||  ||||||||||| |||||||||||    
T  10455766 acatgcattgttatatgcaggggccggggttcgaaccccggacacccccacttattctccttgaaaaaagagaattctaacc 10455847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 349
Target Start/End: Original strand, 31639145 - 31639202
Alignment:
Q  292 gcatagcttagttgacaaagacatgcattgttatatgtaggggtcggaggtcgaaccc 349  Q
    ||||| || ||||||||  |||| ||||||||||||||||||| ||||| ||||||||    
T  31639145 gcataactcagttgacagggacacgcattgttatatgtaggggccggagttcgaaccc 31639202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 389
Target Start/End: Original strand, 67187 - 67262
Alignment:
Q  314 atgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||||||||||||||||  || | |||||||||  ||| |||||||| ||| ||||||||||||||||||||    
T  67187 atgcattgttatatgtaggggctggggttcgaaccctggacaccccacttaatcaccttgaaaaaagtgaattcta 67262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 392
Target Start/End: Original strand, 56314 - 56394
Alignment:
Q  312 acatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    |||||||||||||||||||||||| || | ||||||| |  |||||||  ||||| ||||||||||| ||||||| |||||    
T  56314 acatgcattgttatatgtaggggttggggttcgaaccttgaacatcccgtttattgatcttgaaaaaggtgaattttaacc 56394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 389
Target Start/End: Original strand, 7082 - 7157
Alignment:
Q  314 atgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    ||||||||||||||| ||||||| |   |||||||  |||||  ||||||||||||||||||||| ||||||||||    
T  7082 atgcattgttatatgcaggggtcaggtttcgaacctcatacactccacttattcatcttgaaaaaggtgaattcta 7157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 1062 - 1140
Alignment:
Q  311 gacatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||||  |||||||||||||  || | |||||||| | ||| |||||||||||| ||||||||| ||||||||||    
T  1062 gacatgcataattatatgtaggggctggggttcgaaccccagacaccccacttattcaccttgaaaaaggtgaattcta 1140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 328
Target Start/End: Complemental strand, 21054 - 21019
Alignment:
Q  293 catagcttagttgacaaagacatgcattgttatatg 328  Q
    ||||||| ||||||||||||||||||||||||||||    
T  21054 catagctcagttgacaaagacatgcattgttatatg 21019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 389
Target Start/End: Original strand, 62782 - 62814
Alignment:
Q  357 cccacttattcatcttgaaaaaagtgaattcta 389  Q
    |||||||||||||||| ||||||||||||||||    
T  62782 cccacttattcatcttaaaaaaagtgaattcta 62814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 392
Target Start/End: Original strand, 440423 - 440503
Alignment:
Q  312 acatgcattgttatatgtaggggtcggaggtcgaaccctatacatcccacttattcatcttgaaaaaagtgaattctaacc 392  Q
    ||||||||| ||||||||||||| ||| | ||||  ||   ||| |||||||||||| ||| ||||| |||||||||||||    
T  440423 acatgcattattatatgtaggggccggggttcgactcccgaacaccccacttattcaccttaaaaaaggtgaattctaacc 440503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University