View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20072_high_9 (Length: 515)
Name: NF20072_high_9
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20072_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 17 - 505
Target Start/End: Complemental strand, 52810789 - 52810299
Alignment:
| Q |
17 |
caatactgtattggtctattatgaggacacagggaagtggacaatgggtttctttatatcattgatctctgctatcatagcccttttgacatttttatca |
116 |
Q |
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| T |
52810789 |
caatactgtattggtctattatgaggacacggggaagtggacaatgggtttctttatatcattgatctctgctatcatagcccttttgacatttttatca |
52810690 |
T |
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| Q |
117 |
ggatctcctaaatatagatacttgaagccatcaggaaaccctgtcgtaagggttgctcaggtttttacagctgctgctaggaaatgggatgttgctccag |
216 |
Q |
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| T |
52810689 |
ggatctcctaaatatagatacttgaagccatcaggaaaccctgtcgtaagggttgctcaggtttttacagctgctgctaggaaatgggatgttgctccag |
52810590 |
T |
|
| Q |
217 |
ccaaggcagacaaactttttgaggttctgggttctagatctgccatcaaaggttgtagaaagattctccacagtgatgattttcggtaagctagctctga |
316 |
Q |
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| T |
52810589 |
ccaaggcagacaaactttttgaggttctgggttctagatctgccatcaaaggttgtagaaagattctgcacagtgatgattttcggtaagctagctctga |
52810490 |
T |
|
| Q |
317 |
gataaaacaaaacattattaacttgaagttgaaccaaacaaagtgatatagcaagcaagctatattaatttctaaaaaagatggaagaaagaaccccaaa |
416 |
Q |
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| T |
52810489 |
gataaaacaaaacattattaacttgaagttgaaccaaacaaagtgatatagcaagcaagctatattaatttctaaaaaagatggaagaaagaa-cccaaa |
52810391 |
T |
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| Q |
417 |
cattagatgaatttaat---taataatattttgaccttcaactcattggtaagagttttaccctttaacccatctcaagaaacggagtataa |
505 |
Q |
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| T |
52810390 |
cattagatgaatttaattaataataatattttgaccttcaactcattggtaagagttttaccctttaacccatctcaagaaacggagtataa |
52810299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 499
Target Start/End: Complemental strand, 52810268 - 52810228
Alignment:
| Q |
459 |
ttggtaagagttttaccctttaacccatctcaagaaacgga |
499 |
Q |
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|||||||| |||||||||||||||| ||||||||| ||||| |
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| T |
52810268 |
ttggtaagggttttaccctttaacctatctcaagagacgga |
52810228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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