View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20072_low_10 (Length: 494)

Name: NF20072_low_10
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20072_low_10
NF20072_low_10
[»] chr5 (5 HSPs)
chr5 (1-479)||(2054072-2054550)
chr5 (5-67)||(6633027-6633089)
chr5 (8-67)||(29045332-29045391)
chr5 (1-97)||(34211194-34211291)
chr5 (1-66)||(39351026-39351091)
[»] chr3 (7 HSPs)
chr3 (1-83)||(40241962-40242044)
chr3 (8-71)||(45249356-45249419)
chr3 (6-91)||(44455145-44455231)
chr3 (8-78)||(54399979-54400049)
chr3 (1-74)||(23629250-23629323)
chr3 (22-67)||(26831871-26831916)
chr3 (3-68)||(39611681-39611746)
[»] chr6 (5 HSPs)
chr6 (8-71)||(32147865-32147928)
chr6 (1-73)||(40098-40170)
chr6 (1-97)||(7984620-7984717)
chr6 (9-66)||(33134189-33134246)
chr6 (22-66)||(3989068-3989112)
[»] chr2 (7 HSPs)
chr2 (6-75)||(40821250-40821320)
chr2 (1-83)||(31608214-31608295)
chr2 (8-68)||(9047599-9047659)
chr2 (3-71)||(15335887-15335955)
chr2 (20-83)||(39791602-39791665)
chr2 (8-92)||(36904020-36904105)
chr2 (6-66)||(37743705-37743765)
[»] chr7 (7 HSPs)
chr7 (6-93)||(1397878-1397966)
chr7 (1-49)||(29414685-29414733)
chr7 (8-66)||(28646616-28646674)
chr7 (10-71)||(10625006-10625067)
chr7 (6-51)||(27219899-27219944)
chr7 (1-78)||(45662224-45662301)
chr7 (4-52)||(3181198-3181246)
[»] chr4 (5 HSPs)
chr4 (8-71)||(41621970-41622033)
chr4 (1-66)||(43154559-43154624)
chr4 (3-68)||(45219051-45219116)
chr4 (1-41)||(10097946-10097986)
chr4 (21-81)||(22008626-22008685)
[»] chr1 (4 HSPs)
chr1 (1-67)||(3831382-3831448)
chr1 (1-67)||(32784814-32784880)
chr1 (5-67)||(13028991-13029053)
chr1 (1-46)||(12047236-12047281)
[»] chr8 (3 HSPs)
chr8 (6-43)||(41909238-41909275)
chr8 (2-66)||(24185997-24186061)
chr8 (31-83)||(33012692-33012744)
[»] scaffold0223 (1 HSPs)
scaffold0223 (24-66)||(22137-22179)
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-67)||(171589-171655)


Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 2054072 - 2054550
Alignment:
Q  1 acatgtaaaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatgccctaaagacatttgtagcattttctaaaaggg 100  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2054072 acatgtaaaagtcataactgcacaattttcaatgtaaaaatgactacttttatatgtttaaacaatgccctaaagacatttgtagcattttctaaaaggg 2054171  T
Q  101 aatttgtgtggaacacaggaaaaaggaaaggggtatatattctctatagttactcctcttttgtatttttcttgcaacaaattacgaattggaagtgttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2054172 aatttgtgtggaacacaggaaaaaggaaaggggtatatattctctatagttactcctcttttgtatttttcttgcaacaaattacgaattggaagtgttt 2054271  T
Q  201 agaggagcaaattgagccatagttgaatgactctgtgattctttactgcaagcaattaatttcgatttgaagttaagacaacctaaatcatcttttgtat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2054272 agaggagcaaattgagccatagttgaatgactctgtgattctttactgcaagaaattaatttcgatttgaagttaagacaacctaaatcatcttttgtat 2054371  T
Q  301 tgaatgactcctcttttgtattgaatgacgttgatttggagttaagacaacctaaatcatcatttgtattataattagtcatgatttgttgattattatc 400  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2054372 tgaatgactcctcatttgtattgaatgacgttgatttggagttaagacaacctaaatcatcatttgtattataattagtcatgatttgttgattattatc 2054471  T
Q  401 tttcnnnnnnnnnagtcaagattattatcattttctttaacgaaatttaaaatgaagattatgattagtcatgatttgt 479  Q
    ||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2054472 tttctttttttttagtcaagattattatcattttctttaacgaaatttaaaatgaagattatgattagtcatgatttgt 2054550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 6633089 - 6633027
Alignment:
Q  5 gtaaaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatg 67  Q
    ||||||||||||||| ||||| ||||||| ||||||| |||||||||| ||||||||||||||    
T  6633089 gtaaaagtcataactatacaaattttaatataaaaattactacttttaaatgtttaaacaatg 6633027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 29045391 - 29045332
Alignment:
Q  8 aaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatg 67  Q
    |||||||||||| || ||||||||||| |||||| |||||||||| ||| ||||||||||    
T  29045391 aaagtcataactatataatttttaatgcaaaaattactacttttagatggttaaacaatg 29045332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 34211291 - 34211194
Alignment:
Q  1 acatgtaaaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatgccctaaagacatttg-tagcattttctaaaa 97  Q
    |||| ||||||||||||||  |||||||| ||||||||||| || | ||||  ||||||||||||||  |||| | |||||| || ||||||||||||    
T  34211291 acatataaaagtcataactacacaattttcaatgtaaaaattacaatttttggatgtttaaacaatgatctaacggcatttgttaacattttctaaaa 34211194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 39351091 - 39351026
Alignment:
Q  1 acatgtaaaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaat 66  Q
    |||| |||||||||||| | |||||||| |||||||||||| ||||||| |  |||||||||||||    
T  39351091 acatctaaaagtcataattatacaatttctaatgtaaaaattactacttctgaatgtttaaacaat 39351026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 40242044 - 40241962
Alignment:
Q  1 acatgtaaaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatgccctaaagacatttgt 83  Q
    ||||||||||| |||||||  ||||||||  |||||||||| |||||||||  ||||||||||||||| |||| |||||||||    
T  40242044 acatgtaaaaggcataactacacaattttccatgtaaaaattactacttttgaatgtttaaacaatgctctaaggacatttgt 40241962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 45249419 - 45249356
Alignment:
Q  8 aaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatgccct 71  Q
    ||||||||||| |||||||||  |||| |||| |  ||||||||||||| ||||||||||||||    
T  45249419 aaagtcataaccgtacaatttccaatgcaaaagttgctacttttatatgcttaaacaatgccct 45249356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 44455145 - 44455231
Alignment:
Q  6 taaaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatgccctaaagacatttg-tagcatttt 91  Q
    |||||||||||||| ||||||||| ||||||||| | || ||||||| ||  |||||||||| | ||| | |||||| |||||||||    
T  44455145 taaaagtcataactatacaattttcaatgtaaaatttacgacttttagattcttaaacaatgtcttaagggcatttgttagcatttt 44455231  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 54400049 - 54399979
Alignment:
Q  8 aaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatgccctaaagaca 78  Q
    ||||||||||||| ||||||| |||||||||| | ||| |||||  ||| ||||||||| || ||||||||    
T  54400049 aaagtcataactggacaatttctaatgtaaaagttactgcttttgaatgcttaaacaataccttaaagaca 54399979  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 23629323 - 23629250
Alignment:
Q  1 acatgtaaaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatgccctaaa 74  Q
    ||||||||||||||||| | ||||||||| ||||||||| | ||||||||   ||| | ||| |||||||||||    
T  23629323 acatgtaaaagtcataattatacaattttcaatgtaaaagttactactttaggatgctaaaaaaatgccctaaa 23629250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 26831871 - 26831916
Alignment:
Q  22 acaatttttaatgtaaaaatgactacttttatatgtttaaacaatg 67  Q
    ||||||| |||||||||||| |||||||||| ||| ||||||||||    
T  26831871 acaatttataatgtaaaaattactacttttaaatgcttaaacaatg 26831916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 39611681 - 39611746
Alignment:
Q  3 atgtaaaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatgc 68  Q
    |||| |||||||||||||||||||||| | || ||||||  ||||||| | ||| |||||||||||    
T  39611681 atgttaaagtcataactgtacaattttcagtgcaaaaattgctactttaaaatgcttaaacaatgc 39611746  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 32147928 - 32147865
Alignment:
Q  8 aaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatgccct 71  Q
    ||||||||||| |||||||||  |||| |||||| |||||||||||||| ||||||||||||||    
T  32147928 aaagtcataaccgtacaatttgcaatgcaaaaattactacttttatatgcttaaacaatgccct 32147865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 40098 - 40170
Alignment:
Q  1 acatgtaaaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatgccctaa 73  Q
    ||||||||||||||||||| | ||||||| | ||||||| | ||| |||||  ||| ||||||||||||||||    
T  40098 acatgtaaaagtcataactatgcaattttcattgtaaaacttactgcttttggatgcttaaacaatgccctaa 40170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 7984620 - 7984717
Alignment:
Q  1 acatgtaaaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatgccctaaagacatttg-tagcattttctaaaa 97  Q
    |||||||||||||||||||  | |||||| ||||||||| |  ||||||||  ||| |||||||||| ||||| | || ||| |||||||||| ||||    
T  7984620 acatgtaaaagtcataactacaaaattttcaatgtaaaatttgctacttttggatgcttaaacaatgtcctaagggcacttgttagcattttcaaaaa 7984717  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 33134246 - 33134189
Alignment:
Q  9 aagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaat 66  Q
    |||| ||||||||||||||| ||||| ||||||   |||||||| |||||||||||||    
T  33134246 aagttataactgtacaatttctaatgcaaaaatttatacttttagatgtttaaacaat 33134189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 3989068 - 3989112
Alignment:
Q  22 acaatttttaatgtaaaaatgactacttttatatgtttaaacaat 66  Q
    |||||||| ||||||||| |||||||||||| ||| |||||||||    
T  3989068 acaattttaaatgtaaaagtgactacttttagatgcttaaacaat 3989112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 40821250 - 40821320
Alignment:
Q  6 taaaagtcataactgtacaatttttaatgtaaaaatgactacttttat-atgtttaaacaatgccctaaag 75  Q
    |||||||||||||||||||||||| |||||||||||||| | |||| | ||| ||||||||||| ||||||    
T  40821250 taaaagtcataactgtacaattttcaatgtaaaaatgacaaattttttgatgcttaaacaatgctctaaag 40821320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 31608214 - 31608295
Alignment:
Q  1 acatgtaaaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatgccctaaagacatttgt 83  Q
    |||| ||||| |||||||| ||||||||||||| ||||||| |||| |||  |||| |||||||||||||||||  |||||||    
T  31608214 acatataaaaatcataactatacaatttttaatataaaaattacta-tttgttatgcttaaacaatgccctaaaagcatttgt 31608295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 9047659 - 9047599
Alignment:
Q  8 aaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatgc 68  Q
    ||||||||||| |||||||||| ||||||||| |   |||||||||||| |||||||||||    
T  9047659 aaagtcataaccgtacaattttcaatgtaaaagttgttacttttatatgattaaacaatgc 9047599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 15335887 - 15335955
Alignment:
Q  3 atgtaaaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatgccct 71  Q
    |||| |||||||||| ||||||||||  |||| ||||||  ||||||||| ||| ||||||||||||||    
T  15335887 atgttaaagtcataattgtacaatttcaaatgcaaaaattgctacttttagatgcttaaacaatgccct 15335955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 39791602 - 39791665
Alignment:
Q  20 gtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatgccctaaagacatttgt 83  Q
    ||||||||| |||| |||||||  ||||||||||||| ||||||||| || | |||||||||||    
T  39791602 gtacaatttctaatataaaaattgctacttttatatgcttaaacaatacctttaagacatttgt 39791665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 36904020 - 36904105
Alignment:
Q  8 aaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatgccctaaagacatttg-tagcattttc 92  Q
    ||||||||||| |||||||||  |||| |||| |  ||||||||| ||| |||||||||||||| | |||| ||| ||||||||||    
T  36904020 aaagtcataaccgtacaatttccaatgcaaaagttgctacttttagatgcttaaacaatgcccttaggacacttgttagcattttc 36904105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 37743765 - 37743705
Alignment:
Q  6 taaaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaat 66  Q
    ||||||| ||||||| |||||||||||||||||| | | |||||||| ||| |||| ||||    
T  37743765 taaaagttataactgcacaatttttaatgtaaaagttattacttttaaatgcttaagcaat 37743705  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 1397878 - 1397966
Alignment:
Q  6 taaaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatgccctaaagacatttg-tagcattttct 93  Q
    ||||| ||||||||  |||||||||||| ||||||| |||||||||| ||| |||||||||  |||||  ||||||| |||||||||||    
T  1397878 taaaaatcataactacacaatttttaatataaaaattactacttttaaatgcttaaacaatctcctaataacatttgttagcattttct 1397966  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29414685 - 29414733
Alignment:
Q  1 acatgtaaaagtcataactgtacaatttttaatgtaaaaatgactactt 49  Q
    |||||||||||||||| || ||||||||| ||||||||||| |||||||    
T  29414685 acatgtaaaagtcatacctatacaattttcaatgtaaaaattactactt 29414733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 28646674 - 28646616
Alignment:
Q  8 aaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaat 66  Q
    ||||||||||| |||||||||  ||||||||| |  ||||||||||||| |||||||||    
T  28646674 aaagtcataaccgtacaatttccaatgtaaaagttgctacttttatatgcttaaacaat 28646616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 10625006 - 10625067
Alignment:
Q  10 agtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatgccct 71  Q
    ||||||||| |||||||||| |||| |||| |  ||||||||||||| | ||||||||||||    
T  10625006 agtcataaccgtacaattttcaatgcaaaagtttctacttttatatgctgaaacaatgccct 10625067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 27219899 - 27219944
Alignment:
Q  6 taaaagtcataactgtacaatttttaatgtaaaaatgactactttt 51  Q
    ||||| ||||||||  |||||||||||||||||||| |||||||||    
T  27219899 taaaaatcataactacacaatttttaatgtaaaaattactactttt 27219944  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 45662301 - 45662224
Alignment:
Q  1 acatgtaaaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatgccctaaagaca 78  Q
    |||||| ||||||||||| || ||||||  ||| ||||||| | |||||||| ||| ||||||||| |||| ||||||    
T  45662301 acatgttaaagtcataaccgtgcaatttccaatataaaaattattacttttagatgcttaaacaatacccttaagaca 45662224  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 3181246 - 3181198
Alignment:
Q  4 tgtaaaagtcataactgtacaatttttaatgtaaaaatgactactttta 52  Q
    ||||||| | ||||||| |||||||| ||||||||||| ||||||||||    
T  3181246 tgtaaaaatgataactgcacaattttcaatgtaaaaattactactttta 3181198  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 41621970 - 41622033
Alignment:
Q  8 aaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatgccct 71  Q
    ||||||||||  |||||||||| ||||||||| |  ||||||||||||| ||||||||||||||    
T  41621970 aaagtcataatcgtacaattttcaatgtaaaagttgctacttttatatgcttaaacaatgccct 41622033  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 43154624 - 43154559
Alignment:
Q  1 acatgtaaaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaat 66  Q
    |||||||||||| |||| | |||||||| |||| ||||||| | |||||||| || ||||||||||    
T  43154624 acatgtaaaagtaataaatatacaatttctaatataaaaattattacttttaaatatttaaacaat 43154559  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 45219051 - 45219116
Alignment:
Q  3 atgtaaaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatgc 68  Q
    ||||||||||||||| |  |||||||  ||| ||||||| |||||||||| ||| |||||||||||    
T  45219051 atgtaaaagtcataagtacacaatttcaaatataaaaattactacttttagatgcttaaacaatgc 45219116  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10097986 - 10097946
Alignment:
Q  1 acatgtaaaagtcataactgtacaatttttaatgtaaaaat 41  Q
    ||||||||||||||||||| ||||||||| ||| |||||||    
T  10097986 acatgtaaaagtcataactatacaattttcaatataaaaat 10097946  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 22008685 - 22008626
Alignment:
Q  21 tacaatttttaatgtaaaaatgactacttttatatgtttaaacaatgccctaaagacattt 81  Q
    ||||||||||||||||||  | |||||||||  |||||||||||||| | |||||||||||    
T  22008685 tacaatttttaatgtaaaggt-actacttttgaatgtttaaacaatgacttaaagacattt 22008626  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 3831448 - 3831382
Alignment:
Q  1 acatgtaaaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatg 67  Q
    |||||| |||||||||||||||||||||  |||| ||||||  ||||||||| ||| ||||||||||    
T  3831448 acatgttaaagtcataactgtacaatttccaatgcaaaaatttctacttttagatgcttaaacaatg 3831382  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 32784880 - 32784814
Alignment:
Q  1 acatgtaaaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatg 67  Q
    |||||||||| ||||||||  | ||||||||||||||||||  ||||||||| ||||||||| ||||    
T  32784880 acatgtaaaaatcataactacataatttttaatgtaaaaattgctacttttaaatgtttaaataatg 32784814  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 13029053 - 13028991
Alignment:
Q  5 gtaaaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatg 67  Q
    |||||||| ||||||  |||||||||||||||||| | |||||||||| ||  ||||||||||    
T  13029053 gtaaaagttataactacacaatttttaatgtaaaagttactacttttaaatacttaaacaatg 13028991  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 12047281 - 12047236
Alignment:
Q  1 acatgtaaaagtcataactgtacaatttttaatgtaaaaatgacta 46  Q
    |||||||||||||||||||  ||||||||| |||||||||| ||||    
T  12047281 acatgtaaaagtcataactacacaatttttcatgtaaaaattacta 12047236  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 41909238 - 41909275
Alignment:
Q  6 taaaagtcataactgtacaatttttaatgtaaaaatga 43  Q
    |||||||||||||| |||||||||||||||||||||||    
T  41909238 taaaagtcataactatacaatttttaatgtaaaaatga 41909275  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 24186061 - 24185997
Alignment:
Q  2 catgtaaaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaat 66  Q
    |||||||||||||||||| || ||| ||||||||||||   | |||||||| |||||||||||||    
T  24186061 catgtaaaagtcataactatataatatttaatgtaaaagatattacttttaaatgtttaaacaat 24185997  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 33012692 - 33012744
Alignment:
Q  31 aatgtaaaaatgactacttttatatgtttaaacaatgccctaaagacatttgt 83  Q
    ||||||||||| ||||| |||| |||||||||||||||||||| |||| ||||    
T  33012692 aatgtaaaaattactacatttacatgtttaaacaatgccctaatgacacttgt 33012744  T

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Target: scaffold0223 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 22179 - 22137
Alignment:
Q  24 aatttttaatgtaaaaatgactacttttatatgtttaaacaat 66  Q
    |||||||||||||||||| | |||||||| |||||||||||||    
T  22179 aatttttaatgtaaaaattattacttttaaatgtttaaacaat 22137  T

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Target: scaffold0020 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 171655 - 171589
Alignment:
Q  1 acatgtaaaagtcataactgtacaatttttaatgtaaaaatgactacttttatatgtttaaacaatg 67  Q
    |||||| ||||||| ||||| ||||||||||||| |||| |  ||||||||| ||| ||||||||||    
T  171655 acatgttaaagtcacaactgaacaatttttaatgcaaaagttgctacttttagatgcttaaacaatg 171589  T

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