View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20072_low_11 (Length: 488)
Name: NF20072_low_11
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20072_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 32 - 473
Target Start/End: Complemental strand, 5734783 - 5734330
Alignment:
| Q |
32 |
gagaattcacaatcatgattatttctccaagttcacctatctaacgtgttttccagcaaattaatgctatcaatcaacaagaacactatgcaaacaacaa |
131 |
Q |
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| T |
5734783 |
gagaattcacaatcatgattatttctccaagttcacctatctaacgtgttttccagcaaattaatgctatcaatcaacaagaacaccatgcaaacaacaa |
5734684 |
T |
|
| Q |
132 |
tcttccattgaaacaacacatgcctaaactcactatcttctaataattttcattccttgttgcacctatttattattcaaagcgtgaattgctattatgt |
231 |
Q |
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| T |
5734683 |
tcttccattgaaacaacacatgcctaaactcactatcttctaataattttcattccttgctgcacctatttattattcaaagcgtgaattgctattatgt |
5734584 |
T |
|
| Q |
232 |
gtggtattactgttgctgttttgaattggtgttcaaattcattccttgctactgtcgtgttcatattattgttccaattcaattgtgattgcctttttgt |
331 |
Q |
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| T |
5734583 |
gtggtattactactgctgctttgaattggtgttcaaattcattccttgctactgccgtgttcatattgttgttccaattcaattgtgattgcctttttgt |
5734484 |
T |
|
| Q |
332 |
tttcttcatgttgctgcgttttaaagttgcggttccattcgattccaattgcttgcaactgctgattccgatt------------acttgtccccacttt |
419 |
Q |
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| T |
5734483 |
tttctacctattgctgcgttttaaagttgcggttccattcgattccaattgcttgcaactgctgattccgattgtctccgaattcacttgtccccacttt |
5734384 |
T |
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| Q |
420 |
cgttattgttctcgttgacggaggactcgccatcgccgtttctagttgattttt |
473 |
Q |
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| T |
5734383 |
cgttattgttctcgttgacggaggactcgccctcgccgtttctggttgattttt |
5734330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 25 - 474
Target Start/End: Complemental strand, 12643876 - 12643418
Alignment:
| Q |
25 |
tttgacagagaattcacaatcatgattatttctccaagttcacctatctaacgtgttttccagcaaattaatgctatcaatcaacaagaacactatgcaa |
124 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12643876 |
tttgacagagaattcacaatcatgattttttctccaagttcacctatctaacgtgttttccagcaaattaatgctatcaatcaacaagaacactatgcaa |
12643777 |
T |
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| Q |
125 |
acaacaatcttccattgaaacaacacatgcctaaactcactatcttctaataattttcattccttgttgcacctatttattattcaaagcgtgaattgct |
224 |
Q |
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| T |
12643776 |
acaacaatcttccattgaaacaacacatgcctaaactcactatcttctaataattttcattccttgctgcacctatttattatttaaagcgtgaattgct |
12643677 |
T |
|
| Q |
225 |
attatgtgtggtattactgttgctgttttgaattggtgttcaaattcattccttgctactgtcgtgttcatattattgttccaattcaattgtgattgcc |
324 |
Q |
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| T |
12643676 |
attatgtgtggtattactgctgctgttttcaattggtgttcaaattcattccttgctactgccgtgttcatattgctgttccaattcaattgtaatggcc |
12643577 |
T |
|
| Q |
325 |
tttttgttttcttcatgttgctgcgttttaaagttgcggttccattcgattccaattgcttgcaactgctgattccgatt------------acttgtcc |
412 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12643576 |
tttttgttttcttcctgttgctgcgttttaaagttgcggttccattcgattccaattgcttgcaactgctgattccgattgtctccgaattcacttgtcc |
12643477 |
T |
|
| Q |
413 |
ccactttcgttattgttctcgttgacggaggactcgccatcgccgtttctagttgatttttt |
474 |
Q |
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| T |
12643476 |
---cattcgttattgttctcgttgacggaggactcgccgtcgccgtttctggttgatttttt |
12643418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 395
Target Start/End: Original strand, 7158148 - 7158203
Alignment:
| Q |
340 |
tgttgctgcgttttaaagttgcggttccattcgattccaattgcttgcaactgctg |
395 |
Q |
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||||||||| ||| ||||| |||||||||||| |||| | |||||||||||||||| |
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| T |
7158148 |
tgttgctgcatttcaaagtggcggttccattcaattcaatttgcttgcaactgctg |
7158203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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