View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20072_low_14 (Length: 465)
Name: NF20072_low_14
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20072_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 2137922 - 2138250
Alignment:
| Q |
19 |
caaatttccgacaagttgttcaaaaactaaccggagcatcacaagacccatcagcccaaaaactcccactcacactcccatctcgtctaacagcccaagc |
118 |
Q |
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| T |
2137922 |
caaatttccgacaagttgttcaaaaactaaccggagcatcacaagacccatcagcccaaaaactcccactaacactcccatctcgtctaacagcccaagc |
2138021 |
T |
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| Q |
119 |
ccaagcccaagcccaccgtcctctaccaacaaccaccatggaaccaccaatgggcttnnnnnnncccaacttcaaactccacgaacgccgttctaaaaaa |
218 |
Q |
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| T |
2138022 |
ccaagcccaagcccaccgtcctctaccaacaaccaccatggaaccaccaatgggcttaaaaaaacccaacttcaaactccacgaacgccgttctaaaaaa |
2138121 |
T |
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| Q |
219 |
ctccaactcaacgtgtcggaaaatcccatgatgttccaaaacaacaac------aacaacatgcgaagtgttgttatggcttcaccagtttcaccattgg |
312 |
Q |
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| T |
2138122 |
ctccaactcaacgtgtcggaaaatcccatgatgttccaaaacaacaacaacaataacaacatgcgaagtgttgttatggcttcaccagtttcaccattgg |
2138221 |
T |
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| Q |
313 |
aatattactatagcccaaaatcaccacat |
341 |
Q |
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| T |
2138222 |
aatattactatagcccaaaatcaccacat |
2138250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 385 - 456
Target Start/End: Original strand, 2138294 - 2138365
Alignment:
| Q |
385 |
gtttctatttgcacccctctcctagagcttctcagcaacaaccacctgcacttttacctctttttcctttgc |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2138294 |
gtttctatttgcacccctctcctagagcttctcagcaacaaccacctgcacttttacctctttttcctttgc |
2138365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 20017020 - 20016949
Alignment:
| Q |
19 |
caaatttccgacaagttgttcaaaaactaaccggagcatcacaagacccatcagcccaaaaactcccactca |
90 |
Q |
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||||||||||||||||||| |||||||||||||||||||| |||||| || || ||||||||| ||||||| |
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| T |
20017020 |
caaatttccgacaagttgtccaaaaactaaccggagcatctcaagactcaacactccaaaaacttccactca |
20016949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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