View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20072_low_15 (Length: 445)
Name: NF20072_low_15
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20072_low_15 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 27693097 - 27693526
Alignment:
| Q |
1 |
ttaaacaacatctgactgacataagaaccatactttggggttcagtgttaaattttaaggcggctttttcacaggtttaacaatgttgttgttcataatt |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27693097 |
ttaaacaacatctgactgacataagaaccataatttggggttcggtgttaaattttaaggcggctttttcacaggtttaacaatgttgttgttcataatt |
27693196 |
T |
|
| Q |
101 |
atgaatttattgtttaaactcaagagtagcaacgagaatatactaatttatggaagactagtttagctttaaatatgtggaaaaattctattttgttagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27693197 |
atgaatttattgtttaaactcaagagtagcaacgagaatatactaatttatggaagactagtttagctttaaatatgtggaaaaattctattttgttagt |
27693296 |
T |
|
| Q |
201 |
cattcatagagccatttcaaatcttataaatccatatagtacattgaaatcttaaaagtcttcgaattgaaatctctcaaaatccaaatgaaatataaac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27693297 |
cattcatagagccatttcaaatcttataaatccatatagtacattgaaatcttaaaagtcttcaaattgaaatctctcaaaatccaaatgaaatataaac |
27693396 |
T |
|
| Q |
301 |
cctcacaaatggcacatgatatccatggattaatgccaggaattaagaaagctgcagctacatttgctatacccaaagaaatgccaccttcgacaaaaat |
400 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27693397 |
cctcacaaatggcacatgatatccatggattaatggcaggaattaagaaagctgcagctacatttgctatacccaaagaaatgccaccttcgacaaaaat |
27693496 |
T |
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| Q |
401 |
ggcatgacaaatgcatggcctagtccaatg |
430 |
Q |
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| T |
27693497 |
ggcatgacaaatgcatggcctagtccaatg |
27693526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 295 - 428
Target Start/End: Original strand, 31761 - 31894
Alignment:
| Q |
295 |
ataaaccctcacaaatggcacatgatatccatggattaatgccaggaattaagaaagctgcagctacatttgctatacccaaagaaatgccaccttcgac |
394 |
Q |
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||||||||||||||||| |||| | ||| ||| | |||||||| || ||| ||| |||| |||| |||||||| ||| ||||||||||||||| || |
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| T |
31761 |
ataaaccctcacaaatgaggcatgttgtccctgggtcaatgccagagatgaaggaagttgcaattacagttgctatagccacagaaatgccaccttcaac |
31860 |
T |
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| Q |
395 |
aaaaatggcatgacaaatgcatggcctagtccaa |
428 |
Q |
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| T |
31861 |
aaaaatggcatgacaaatgcatggtgtagtccaa |
31894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 428
Target Start/End: Complemental strand, 1442645 - 1442597
Alignment:
| Q |
380 |
aatgccaccttcgacaaaaatggcatgacaaatgcatggcctagtccaa |
428 |
Q |
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|||||||||||| | |||||||||||||||||||||||| | ||||||| |
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| T |
1442645 |
aatgccaccttcaataaaaatggcatgacaaatgcatggtccagtccaa |
1442597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 36430192 - 36430229
Alignment:
| Q |
224 |
ttataaatccatatagtacattgaaatcttaaaagtct |
261 |
Q |
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||||||||||||| ||||| |||||||||||||||||| |
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| T |
36430192 |
ttataaatccataaagtactttgaaatcttaaaagtct |
36430229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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