View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20072_low_17 (Length: 440)
Name: NF20072_low_17
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20072_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 16 - 427
Target Start/End: Complemental strand, 25655462 - 25655051
Alignment:
| Q |
16 |
caatttaacatcgtgattgtaaaccataactatttgcaatatactcaaagggaattagtatgcatactcaaagcttgagcttttcgcctacgatcatctg |
115 |
Q |
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| T |
25655462 |
caatttaacatcgtgattgtaaaccataactatttgcaatatactcaaagggaattagtatgcatactcaaagcttgagcttttcgcctacgatcatctg |
25655363 |
T |
|
| Q |
116 |
taagaataacagttgaaggaactctcttagcaggaccacacgaatatcccgctcccggtccaagtaacttaaaatcctgaggtagtttaactgtcttgtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| |
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| T |
25655362 |
taagaataacagttgaaggaactctcttagcagggccacatgaatatcccgctcccggtccaagcaatttaaaatcctgaggcagtttaactgtcttgtt |
25655263 |
T |
|
| Q |
216 |
agttcttccggagagtcctacacccatctgaaatgccgagattgcacctgaaggatcctgtccccacgatgttagcacaccacctttgcaacagttcgtg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25655262 |
agttcttccggagagtcctacacccatctgaaatgccgagatcgcacctgaaggatcctgtccccacgatgttagcacaccacctttgcaacaattcgtg |
25655163 |
T |
|
| Q |
316 |
tattgcatattgtaagatgctcctggtaataagtcaacaacttgaggacttctcttgcaactatgaggaatctttaacttgaactttgaacaatctcctt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25655162 |
tattgcatattgtaagatgctcctggtaataagtcaacaacttgaggacttctcttgcaactatgaggaatctttaacttgaactttgaacaatcgcctt |
25655063 |
T |
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| Q |
416 |
gttctgttgcct |
427 |
Q |
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|||||||||||| |
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| T |
25655062 |
gttctgttgcct |
25655051 |
T |
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