View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20072_low_18 (Length: 411)

Name: NF20072_low_18
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20072_low_18
NF20072_low_18
[»] chr3 (6 HSPs)
chr3 (213-407)||(6931327-6931520)
chr3 (19-145)||(6931163-6931289)
chr3 (342-411)||(6486821-6486890)
chr3 (20-54)||(30172069-30172103)
chr3 (20-53)||(28725737-28725770)
chr3 (18-54)||(4304141-4304177)
[»] chr5 (2 HSPs)
chr5 (18-53)||(29673290-29673325)
chr5 (20-52)||(2846573-2846605)
[»] chr7 (5 HSPs)
chr7 (18-52)||(12821179-12821213)
chr7 (18-51)||(20164620-20164653)
chr7 (18-54)||(3555363-3555399)
chr7 (18-54)||(19105476-19105512)
chr7 (20-52)||(29635235-29635267)
[»] chr1 (3 HSPs)
chr1 (19-52)||(30746773-30746806)
chr1 (19-52)||(30768224-30768257)
chr1 (18-54)||(14760095-14760131)
[»] chr8 (3 HSPs)
chr8 (18-57)||(6906259-6906298)
chr8 (18-54)||(15229614-15229650)
chr8 (20-52)||(31212313-31212345)
[»] chr6 (2 HSPs)
chr6 (18-50)||(13340445-13340477)
chr6 (18-54)||(31298946-31298982)
[»] chr4 (1 HSPs)
chr4 (18-50)||(53343707-53343739)
[»] chr2 (3 HSPs)
chr2 (18-50)||(16127920-16127952)
chr2 (18-54)||(18509495-18509531)
chr2 (18-54)||(43130364-43130400)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 213 - 407
Target Start/End: Original strand, 6931327 - 6931520
Alignment:
Q  213 ttttagtagcattttaactgttaagtctgtaaaattaaatttagatttaatcagatatagaaagttgctgcatatataagcaaatggtaacacataacgt 312  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6931327 ttttagtagcattttaactgt-aagtctgtaaaattaaatttatatttaatcagatatagaaagttgctacatatataagcaaatggtaacacataacgt 6931425  T
Q  313 gaacaatttacaaagatatgatgaaccaattataattagctttttcttgaacagcaagctattgcaagaaaattggaagcagtgatattgcaata 407  Q
    |||||||||||||||| ||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6931426 gaacaatttacaaagaaatgatgaattaattataattagcttttccttgaacagcaagctattgcaagaaaattggaaacagtgatattgcaata 6931520  T

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Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 6931163 - 6931289
Alignment:
Q  19 gtatatttaaggggaccatttacttatttaaccctacaaataataactcctaatgactaatctatatctccaatattagtgattgggagctggactccaa 118  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6931163 gtatatttaagaggactatttacttatttaaccctacaaataataactcctaatgactaatctatatcttcaatattagtgattgggagctggactccaa 6931262  T
Q  119 tgccttgaagttcaccaactgtaacaa 145  Q
    |||||||||||||||||||||||||||    
T  6931263 tgccttgaagttcaccaactgtaacaa 6931289  T

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Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 342 - 411
Target Start/End: Complemental strand, 6486890 - 6486821
Alignment:
Q  342 ttataattagctttttcttgaacagcaagctattgcaagaaaattggaagcagtgatattgcaataagac 411  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6486890 ttataattagcttttccttgaacagcaagctattgcaagaaaattggaagcagtgatattgcaataagac 6486821  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 30172103 - 30172069
Alignment:
Q  20 tatatttaaggggaccatttacttatttaacccta 54  Q
    |||||||| ||||||||||||||||||||||||||    
T  30172103 tatatttagggggaccatttacttatttaacccta 30172069  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 28725737 - 28725770
Alignment:
Q  20 tatatttaaggggaccatttacttatttaaccct 53  Q
    |||||||| |||||||||||||||||||||||||    
T  28725737 tatatttagggggaccatttacttatttaaccct 28725770  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 4304177 - 4304141
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaacccta 54  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  4304177 ggtatatttaaggggacgatttatttatttaacccta 4304141  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 29673325 - 29673290
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaaccct 53  Q
    ||||||||||||||||||||||||||||||||||||    
T  29673325 ggtatatttaaggggaccatttacttatttaaccct 29673290  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 2846605 - 2846573
Alignment:
Q  20 tatatttaaggggaccatttacttatttaaccc 52  Q
    |||||||| ||||||||||||||||||||||||    
T  2846605 tatatttagggggaccatttacttatttaaccc 2846573  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 12821213 - 12821179
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaaccc 52  Q
    |||||||||||||||||||||||||||||||||||    
T  12821213 ggtatatttaaggggaccatttacttatttaaccc 12821179  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 20164653 - 20164620
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaacc 51  Q
    ||||||||| ||||||||||||||||||||||||    
T  20164653 ggtatattttaggggaccatttacttatttaacc 20164620  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 3555399 - 3555363
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaacccta 54  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  3555399 ggtatatttagggggaccatttgcttatttaacccta 3555363  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 19105476 - 19105512
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaacccta 54  Q
    |||||||||| |||||| |||||||||||||||||||    
T  19105476 ggtatatttagggggactatttacttatttaacccta 19105512  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 29635267 - 29635235
Alignment:
Q  20 tatatttaaggggaccatttacttatttaaccc 52  Q
    |||||||| ||||||||||||||||||||||||    
T  29635267 tatatttagggggaccatttacttatttaaccc 29635235  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 30746806 - 30746773
Alignment:
Q  19 gtatatttaaggggaccatttacttatttaaccc 52  Q
    ||||||||||||||||||||||||||||||||||    
T  30746806 gtatatttaaggggaccatttacttatttaaccc 30746773  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 30768257 - 30768224
Alignment:
Q  19 gtatatttaaggggaccatttacttatttaaccc 52  Q
    ||||||||||||||||||||||||||||||||||    
T  30768257 gtatatttaaggggaccatttacttatttaaccc 30768224  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 14760095 - 14760131
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaacccta 54  Q
    |||||||||||||||| ||||||||||||||||||||    
T  14760095 ggtatatttaaggggatcatttacttatttaacccta 14760131  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 6906298 - 6906259
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaaccctacaa 57  Q
    |||||||||| |||||| ||||||||||||||||||||||    
T  6906298 ggtatatttagggggactatttacttatttaaccctacaa 6906259  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 15229650 - 15229614
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaacccta 54  Q
    |||||||||||||| || |||||||||||||||||||    
T  15229650 ggtatatttaagggaactatttacttatttaacccta 15229614  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 31212345 - 31212313
Alignment:
Q  20 tatatttaaggggaccatttacttatttaaccc 52  Q
    ||||||||||||||| |||||||||||||||||    
T  31212345 tatatttaaggggactatttacttatttaaccc 31212313  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 13340477 - 13340445
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaac 50  Q
    ||||||||||||||||| |||||||||||||||    
T  13340477 ggtatatttaaggggactatttacttatttaac 13340445  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 31298946 - 31298982
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaacccta 54  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  31298946 ggtatatttaaagggactatttacttatttaacccta 31298982  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 53343739 - 53343707
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaac 50  Q
    |||||||||||| ||||||||||||||||||||    
T  53343739 ggtatatttaagaggaccatttacttatttaac 53343707  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 16127952 - 16127920
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaac 50  Q
    ||||||||||||||||| |||||||||||||||    
T  16127952 ggtatatttaaggggactatttacttatttaac 16127920  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 18509531 - 18509495
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaacccta 54  Q
    |||||||||| |||||||||||| |||||||||||||    
T  18509531 ggtatatttagggggaccatttaattatttaacccta 18509495  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 43130364 - 43130400
Alignment:
Q  18 ggtatatttaaggggaccatttacttatttaacccta 54  Q
    |||||||||| || |||||||||||||||||||||||    
T  43130364 ggtatatttagggagaccatttacttatttaacccta 43130400  T

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