View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20072_low_20 (Length: 404)
Name: NF20072_low_20
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20072_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 13 - 386
Target Start/End: Complemental strand, 2789420 - 2789047
Alignment:
| Q |
13 |
aatatcacatccatcagcgccattttgctttgctttctcacactcattcaagaatgtattgaatgcatcctcgacatatttaactgcgtccaaaacacac |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2789420 |
aatatcacatccatcagctccattttgctttgctttctcacactcattcaagaatgtattgaatgcaacctcgacatatttaactgcgtccaaaacacac |
2789321 |
T |
|
| Q |
113 |
atgttctcgatcaacttgttgggatatatactctttctatgatccccattaagagtagctgccattagtaccaattcttcctgaaattcactcaacttgg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2789320 |
atgttctcgatcaacttgttgggatatatactctttctatgatccccattaagagtagctgccattagtaccaattcttcctgaaattcactcaacttgg |
2789221 |
T |
|
| Q |
213 |
cttcttctttagcagcagcctctcgcagcttaatcggttcgggcagtttttctgcacaatgaatacttaaatagtcaagaaacacgattgatggtcaaat |
312 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2789220 |
cttcttctttagcagcggcctctcgcagcttaatcggttcgggcagtttttctgcacaatgaatacttaaatagtcaagaaacacgattgatggtcgaat |
2789121 |
T |
|
| Q |
313 |
ttgttattcatgtacatgtaatatcaataattgattattgatagatattataatgattgaaaacagaattgatc |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2789120 |
ttgttattcatgtacatgtaatatcaataattgattaatgatagatattataatgattgaaaacagaattgatc |
2789047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 386
Target Start/End: Complemental strand, 2830674 - 2830301
Alignment:
| Q |
13 |
aatatcacatccatcagcgccattttgctttgctttctcacactcattcaagaatgtattgaatgcatcctcgacatatttaactgcgtccaaaacacac |
112 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
2830674 |
aatatcacatccatcagctccattttgcttggctttctcacactcattcaaaaatgtattgaatgcatcctcggcatatttaactgcgtccgaaacacac |
2830575 |
T |
|
| Q |
113 |
atgttctcgatcaacttgttgggatatatactctttctatgatccccattaagagtagctgccattagtaccaattcttcctgaaattcactcaacttgg |
212 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2830574 |
atgttctcgatcaacttgtcaggatatatactctttttatgatccccattaagagtagctgccattagtaccaattcttcctgaaattcactcaacttgg |
2830475 |
T |
|
| Q |
213 |
cttcttctttagcagcagcctctcgcagcttaatcggttcgggcagtttttctgcacaatgaatacttaaatagtcaagaaacacgattgatggtcaaat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2830474 |
cttcttctttagcagcagcctctcgcagcttaatcggttcgggcagtttttctgcacaatgaacacttaaatagtcaagaaacacgattgatggtcgaat |
2830375 |
T |
|
| Q |
313 |
ttgttattcatgtacatgtaatatcaataattgattattgatagatattataatgattgaaaacagaattgatc |
386 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||| |||||||| | ||||||| ||||||||| |
|
|
| T |
2830374 |
ttgttattcacgtacatgtaatatcaataattgattaatgatagacattataatcactgaaaactgaattgatc |
2830301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University