View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20072_low_21 (Length: 399)
Name: NF20072_low_21
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20072_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 124 - 392
Target Start/End: Original strand, 1972117 - 1972382
Alignment:
| Q |
124 |
atttgatatggttattttaaaatatttgattgaaattccaattgttattttgtttcattgttcttgagaatgtaattttcccatttcacattggtggttg |
223 |
Q |
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| T |
1972117 |
atttgatttggttattttaaaatatttgattgaaattctaattgttgttttgtttcattgttcttgagaatgtaattttcccatttcacattggtggttg |
1972216 |
T |
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| Q |
224 |
atttgaagcttttgattggaatccatctacactatatgatatacaacaaagattttattgtgacttcaactttcatattgctattctaagatatacaata |
323 |
Q |
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| T |
1972217 |
atttgaagcttt-gattggaatccatctacactatatgata--caacaaagattttattgtgacttcaactttcatattgctattctaagatatacaata |
1972313 |
T |
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| Q |
324 |
atgaataggtttgtggttacatccctatcgttctattttgaattcccattttgaaaatttcctttgctt |
392 |
Q |
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| T |
1972314 |
atgaataggtttgtggttacatctctatcgttctattttgaattcccattttaaaaatttcctttgctt |
1972382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 1971942 - 1972045
Alignment:
| Q |
19 |
tttcaatgtttgactgcaactccaacctgatatgttatctctttggtgaaatggtaggaatcaatttctttttattactatctatgccttttgagttttt |
118 |
Q |
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| T |
1971942 |
tttcaatatttgaatgcaacaccaacctgatatgttatctctttggtgtaatggtaggaatcaatttctttttattactatttatgccttttgagttttt |
1972041 |
T |
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| Q |
119 |
gaaa |
122 |
Q |
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|||| |
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| T |
1972042 |
gaaa |
1972045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 19963359 - 19963439
Alignment:
| Q |
147 |
atttgattgaaattccaattgttattttgtttcattgttcttgagaatgtaattttcccatttcacattggtggttgattt |
227 |
Q |
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| T |
19963359 |
atttgattgaaattctaattgttgttttgtttcattgttcttgagaatgtaattttcccatttcacattggtggttcattt |
19963439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 19963451 - 19963497
Alignment:
| Q |
181 |
ttgttcttgagaatgtaattttcccatttcacattggtggttgattt |
227 |
Q |
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| T |
19963451 |
ttgttcctgagaatgtaattttcccatttcacattggtggttcattt |
19963497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 19962918 - 19962982
Alignment:
| Q |
19 |
tttcaatgtttgactgcaactccaacctgatatgttatctctttggtgaaatggtaggaatcaat |
83 |
Q |
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| T |
19962918 |
tttcaatatttgaccgcaactctaacacaatacgttatctctttggtaaaatggtaggaatcaat |
19962982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 4327056 - 4326980
Alignment:
| Q |
18 |
atttcaatgtttgactgcaactccaacctgatatgttatctctttggtgaaatggtaggaatcaatttctttttatt |
94 |
Q |
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|||||||| ||||| |||||||||||| |||| ||| |||||||||| |||||||| |||||||||| || ||||| |
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| T |
4327056 |
atttcaatccttgacagcaactccaacccgatacgttttctctttggtaaaatggtatgaatcaattttttattatt |
4326980 |
T |
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