View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20072_low_25 (Length: 361)

Name: NF20072_low_25
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20072_low_25
NF20072_low_25
[»] chr5 (23 HSPs)
chr5 (1-342)||(9074628-9074966)
chr5 (1-343)||(8535360-8535702)
chr5 (30-343)||(8528805-8529115)
chr5 (1-343)||(1600205-1600527)
chr5 (28-101)||(8636968-8637041)
chr5 (142-343)||(8677664-8677865)
chr5 (28-93)||(8644321-8644386)
chr5 (28-93)||(8677923-8677988)
chr5 (156-342)||(8636727-8636913)
chr5 (30-103)||(2856824-2856897)
chr5 (30-103)||(2874434-2874507)
chr5 (36-93)||(2904938-2904995)
chr5 (9-93)||(8641480-8641564)
chr5 (30-103)||(2844997-2845070)
chr5 (278-343)||(8548273-8548338)
chr5 (142-341)||(8644073-8644272)
chr5 (279-334)||(8641242-8641297)
chr5 (146-198)||(8548141-8548193)
chr5 (1-60)||(8548014-8548073)
chr5 (294-340)||(2845222-2845268)
chr5 (294-340)||(2857043-2857089)
chr5 (279-321)||(9003351-9003393)
chr5 (279-340)||(2905127-2905188)
[»] chr4 (1 HSPs)
chr4 (30-343)||(9442966-9443276)
[»] chr7 (2 HSPs)
chr7 (1-342)||(48361757-48362100)
chr7 (28-343)||(35779696-35780002)
[»] chr1 (2 HSPs)
chr1 (26-111)||(26324200-26324285)
chr1 (156-343)||(5130665-5130853)
[»] scaffold0627 (3 HSPs)
scaffold0627 (30-111)||(4738-4819)
scaffold0627 (277-343)||(4519-4585)
scaffold0627 (156-198)||(4663-4705)
[»] chr6 (2 HSPs)
chr6 (30-93)||(16716455-16716518)
chr6 (275-343)||(16716206-16716274)


Alignment Details
Target: chr5 (Bit Score: 180; Significance: 4e-97; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 9074628 - 9074966
Alignment:
Q  1 ttacatttgtgactggatcttgttctctgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatact 100  Q
    |||||||||||||||||  || || |||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||  |||||    
T  9074628 ttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttacaacattgatact 9074727  T
Q  101 tcgttcaatccatctggcgatcgtacttcatggactacaaatttatgtttgcctataaaacactttgaagaaggtgctgccatattgttacatcattccc 200  Q
    ||||||||||| || |||  || || | |||||  | ||  ||||||   ||| |||||||||||||||||||||||||||||||||||| |||||| |     
T  9074728 tcgttcaatccttcgggctgtcttattacatggggttcaggtttatg---gccgataaaacactttgaagaaggtgctgccatattgttatatcattgct 9074824  T
Q  201 aaaattgtttgatgtactatgaacctgaaaaatatgaattcaaacttttccgaatacatgggagtcgttcaatgttttttgaagtaatcccacatattcc 300  Q
    | |||||||| || | |||||||||||| ||||||| ||||||| |||| ||||| |||||||||| ||||| |||||||||||||||||||||||||||    
T  9074825 acaattgttttatcttctatgaacctgagaaatatggattcaaagtttttcgaattcatgggagtcattcaaagttttttgaagtaatcccacatattcc 9074924  T
Q  301 aagtttaatttcattgaaggatgtcttgaaaggagacaatat 342  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  9074925 aagtctaatttcattgaaggatgtcttgaaaggagacaatat 9074966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 8535702 - 8535360
Alignment:
Q  1 ttacatttgtgactggatcttgttctctgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatact 100  Q
    |||||||||||| | || ||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||  |||||    
T  8535702 ttacatttgtgattcgacctttttatctgatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacattgatact 8535603  T
Q  101 tcgttcaatccatctggcgatcgtacttcatggactacaaatttatgtttgcctataaaacactttgaagaaggtgctgccatattgttacatcattccc 200  Q
    || |||||||| || |    ||||  | || |||       |||| | | ||| |||||||||||||||||||||||||||||||||||| ||||||||     
T  8535602 tcattcaatccttcggaaagtcgtgttccacggagatatggtttaagctggccaataaaacactttgaagaaggtgctgccatattgttatatcattcct 8535503  T
Q  201 aaaattgtttgatgtactatgaacctgaaaaatatgaattcaaacttttccgaatacatgggagtcgttcaatgttttttgaagtaatcccacatattcc 300  Q
      |||||||| || |||||||||||||| ||||||| |||| || |||| |||||  | |||||| ||||||  |||||||||||||||||||| |||||    
T  8535502 gcaattgttttatctactatgaacctgagaaatatggattcgaagtttttcgaatttacgggagtagttcaaatttttttgaagtaatcccacacattcc 8535403  T
Q  301 aagtttaatttcattgaaggatgtcttgaaaggagacaatatt 343  Q
    |||| ||||||||||||||||||| |||||||| |||||||||    
T  8535402 aagtctaatttcattgaaggatgttttgaaaggtgacaatatt 8535360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 30 - 343
Target Start/End: Complemental strand, 8529115 - 8528805
Alignment:
Q  30 atgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatacttcgttcaatccatctggcgatcgtacttc 129  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||| | |||  |||||  | |    
T  8529115 atgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacatcgatacttcgttcaatcctt-tgg--atcgtgttcc 8529019  T
Q  130 atggactacaaatttatgtttgcctataaaacactttgaagaaggtgctgccatattgttacatcattcccaaaattgtttgatgtactatgaacctgaa 229  Q
    | ||  |     |||| | | ||| |||||||||||||||||||||||||||||||||| | ||||||||   |||||||| |  ||||| |||||||||    
T  8529018 acggggttatggtttaagctggccgataaaacactttgaagaaggtgctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaa 8528919  T
Q  230 aaatatgaattcaaacttttccgaatacatgggagtcgttcaatgttttttgaagtaatcccacatattccaagtttaatttcattgaaggatgtcttga 329  Q
    |||||||  |||||| |||| ||||| |||||||||||   ||  | |||||||||||||||||| ||||||||| ||||||||||||||||||| ||||    
T  8528918 aaatatgggttcaaagtttttcgaattcatgggagtcggataaattattttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttga 8528819  T
Q  330 aaggagacaatatt 343  Q
    |||||| |||||||    
T  8528818 aaggagtcaatatt 8528805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 1600205 - 1600527
Alignment:
Q  1 ttacatttgtgactggatcttgttctctgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatact 100  Q
    ||||||||||||||  | ||| || ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||   | |||||    
T  1600205 ttacatttgtgact--acctttttatctgatgttccaatgtgggttatgaaggaatatggcattgaagaatcatggactaaggtttacaagtacgatact 1600302  T
Q  101 tcgttcaatccatctggcgatcgtacttcatggactacaaatttatgtttgcctataaaacactttgaagaaggtgctgccatattgttacatcattccc 200  Q
    || ||||||||            |  |||||||  | |   ||||||   ||| ||| |||||||||||||||||||||||||||||||| || |||       
T  1600303 tcattcaatcc------------tttttcatggtgttcgggtttatg---gccgatacaacactttgaagaaggtgctgccatattgttatatgatt--- 1600384  T
Q  201 aaaattgtttgatgtactatgaacctgaaaaatatgaattcaaacttttccgaatacatgggagtcgttcaatgttttttgaagtaatcccacatattcc 300  Q
    | |||||||| || || ||||||||||  ||||||  || ||||  |||   ||| |||||||||||||||   | ||||||| ||||||| ||||||||    
T  1600385 acaattgtttaatctattatgaacctgcgaaatatcgatgcaaagcttttgaaattcatgggagtcgttcagattgttttgaaataatcccgcatattcc 1600484  T
Q  301 aagtttaatttcattgaaggatgtcttgaaaggagacaatatt 343  Q
    |||| |||||||||||||||||||||||||||| |||||||||    
T  1600485 aagtctaatttcattgaaggatgtcttgaaaggggacaatatt 1600527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 8637041 - 8636968
Alignment:
Q  28 tgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatactt 101  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  8637041 tgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaacatcgatactt 8636968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 343
Target Start/End: Complemental strand, 8677865 - 8677664
Alignment:
Q  142 tttatgtttgcctataaaacactttgaagaaggtgctgccatattgttacatcattcccaaaattgtttgatgtactatgaacctgaaaaatatgaattc 241  Q
    |||||||| |||  |||||||||||||||| |||||||||||||||||| ||||||||   |||||| | || ||||||||||| || ||| |||  |||    
T  8677865 tttatgttggccggtaaaacactttgaagagggtgctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacatggtttc 8677766  T
Q  242 aaacttttccgaatacatgggagtcgttcaatgttttttgaagtaatcccacatattccaagtttaatttcattgaaggatgtcttgaaaggagacaata 341  Q
    ||| |||| ||||| || || | |  |||    ||| ||||| |||| |||||| |||||||| |||| ||||||||||||||  |||||||||||||||    
T  8677765 aaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaata 8677666  T
Q  342 tt 343  Q
    ||    
T  8677665 tt 8677664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 8644386 - 8644321
Alignment:
Q  28 tgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacat 93  Q
    ||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  8644386 tgatgttgcaatgtgggttatgaatgaatatgacattggagaatcatggactaaggtttacaacat 8644321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 8677988 - 8677923
Alignment:
Q  28 tgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacat 93  Q
    ||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  8677988 tgatgttgcaatgtgggatatgaatgaatatggcattggagaatcatggactaaggtttacaacat 8677923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 156 - 342
Target Start/End: Complemental strand, 8636913 - 8636727
Alignment:
Q  156 taaaacactttgaagaaggtgctgccatattgttacatcattcccaaaattgtttgatgtactatgaacctgaaaaatatgaattcaaacttttccgaat 255  Q
    |||||||||||||||| || ||||||||||||||| ||||||||   |||||| | || ||||||||||| || |||  ||  |||||| ||||  ||||    
T  8636913 taaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacttggtttcaaagtttttagaat 8636814  T
Q  256 acatgggagtcgttcaatgttttttgaagtaatcccacatattccaagtttaatttcattgaaggatgtcttgaaaggagacaatat 342  Q
     || || | |  |||   |||| ||||| |||| |||||| |||||||| |||| ||||||||||||||| ||||||||||||||||    
T  8636813 tcaaggcacttcttccgagtttgttgaaataattccacatgttccaagtctaatctcattgaaggatgtcgtgaaaggagacaatat 8636727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 2856824 - 2856897
Alignment:
Q  30 atgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatacttcg 103  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||  ||||||||    
T  2856824 atgttacaatgtgggttatgaatgaatatggcattggagaatcatggactattgtttacaacattgatacttcg 2856897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 2874434 - 2874507
Alignment:
Q  30 atgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatacttcg 103  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||  ||||||||    
T  2874434 atgttacaatgtgggttatgaatgaatatggcattggagaatcatggactattgtttacaacattgatacttcg 2874507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 2904938 - 2904995
Alignment:
Q  36 caatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacat 93  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  2904938 caatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacat 2904995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 8641564 - 8641480
Alignment:
Q  9 gtgactggatcttgttctctgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacat 93  Q
    |||||| || ||| |||| ||||||  || ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  8641564 gtgactcgacctttttctttgatgtcacagtgtgggttatgaatgaatatggcattggagaatcatggactaaggcttacaacat 8641480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 2844997 - 2845070
Alignment:
Q  30 atgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatacttcg 103  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||  ||||||| |||  ||||||||    
T  2844997 atgttacaatgtgggttatgaatgaatatggcattggagaatcatggactattgtttacagcattgatacttcg 2845070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 8548273 - 8548338
Alignment:
Q  278 tttgaagtaatcccacatattccaagtttaatttcattgaaggatgtcttgaaaggagacaatatt 343  Q
    ||||||||||| | ||||||||||||| |||| ||||||||||||||| |||||||||||||||||    
T  8548273 tttgaagtaattcaacatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatatt 8548338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 142 - 341
Target Start/End: Complemental strand, 8644272 - 8644073
Alignment:
Q  142 tttatgtttgcctataaaacactttgaagaaggtgctgccatattgttacatcattcccaaaattgtttgatgtactatgaacctgaaaaatatgaattc 241  Q
    |||||||| |||  ||||| |||||||||| || ||||||||||||||| ||||||||   |||||| | || |||||||||||  | ||| |||  |||    
T  8644272 tttatgttggccggtaaaaaactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccaagaaacatgctttc 8644173  T
Q  242 aaacttttccgaatacatgggagtcgttcaatgttttttgaagtaatcccacatattccaagtttaatttcattgaaggatgtcttgaaaggagacaata 341  Q
    ||| |||| ||||| || || | |  |||    ||| ||||| |||| |||||| |||||||| |||| ||||||||||||||  |||||||||||||||    
T  8644172 aaagtttttcgaattcacggcatttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaata 8644073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 8641297 - 8641242
Alignment:
Q  279 ttgaagtaatcccacatattccaagtttaatttcattgaaggatgtcttgaaagga 334  Q
    |||||||||| ||||||||||||||| |||| ||||||||||||||| ||||||||    
T  8641297 ttgaagtaattccacatattccaagtctaatctcattgaaggatgtcgtgaaagga 8641242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 8548141 - 8548193
Alignment:
Q  146 tgtttgcctataaaacactttgaagaaggtgctgccatattgttacatcattc 198  Q
    ||||||||  |||||||||||||||| ||||||||| |||||||| |||||||    
T  8548141 tgtttgccggtaaaacactttgaagagggtgctgccgtattgttatatcattc 8548193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 8548014 - 8548073
Alignment:
Q  1 ttacatttgtgactggatcttgttctctgatgtttcaatgtgggttatgaatgaatatgg 60  Q
    ||||||||||||||||| ||   ||||| ||||| |||||||||||||||| ||||||||    
T  8548014 ttacatttgtgactggaactatctctcttatgttacaatgtgggttatgaacgaatatgg 8548073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 2845222 - 2845268
Alignment:
Q  294 atattccaagtttaatttcattgaaggatgtcttgaaaggagacaat 340  Q
    ||||||||||| |||| |||||||| |||||| ||||||||||||||    
T  2845222 atattccaagtctaatatcattgaacgatgtcgtgaaaggagacaat 2845268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 2857043 - 2857089
Alignment:
Q  294 atattccaagtttaatttcattgaaggatgtcttgaaaggagacaat 340  Q
    ||||||||||| |||| |||||||| |||||| ||||||||||||||    
T  2857043 atattccaagtctaatatcattgaacgatgtcgtgaaaggagacaat 2857089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 9003393 - 9003351
Alignment:
Q  279 ttgaagtaatcccacatattccaagtttaatttcattgaagga 321  Q
    |||||||||| ||||||||||||||| |||| |||||||||||    
T  9003393 ttgaagtaattccacatattccaagtctaatctcattgaagga 9003351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 2905127 - 2905188
Alignment:
Q  279 ttgaagtaatcccacatattccaagtttaatttcattgaaggatgtcttgaaaggagacaat 340  Q
    ||||||| || | ||||||||||||| |||| |||||||| |||||| |||| |||||||||    
T  2905127 ttgaagttattcaacatattccaagtctaatatcattgaaagatgtcgtgaatggagacaat 2905188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 30 - 343
Target Start/End: Complemental strand, 9443276 - 9442966
Alignment:
Q  30 atgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatacttcgttcaatccatctggcgatcgtacttc 129  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||| | |||  |||||  | |    
T  9443276 atgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacatcgatacttcgttcaatcctt-tgg--atcgtgttcc 9443180  T
Q  130 atggactacaaatttatgtttgcctataaaacactttgaagaaggtgctgccatattgttacatcattcccaaaattgtttgatgtactatgaacctgaa 229  Q
    | ||  |     |||| | | ||| |||||||||||||||||||||||||||||||||| | ||||||||   |||||||| |  ||||| |||||||||    
T  9443179 acggggttatggtttaagctggccgataaaacactttgaagaaggtgctgccatattgtcatatcattccttcaattgttttacctactacgaacctgaa 9443080  T
Q  230 aaatatgaattcaaacttttccgaatacatgggagtcgttcaatgttttttgaagtaatcccacatattccaagtttaatttcattgaaggatgtcttga 329  Q
    |||||||  |||||| |||| ||||| |||||||||||   ||  | |||||||||||||| ||| ||||||||| ||||||||||||||||||| ||||    
T  9443079 aaatatgggttcaaagtttttcgaattcatgggagtcggaaaaattattttgaagtaatccaacacattccaagtctaatttcattgaaggatgttttga 9442980  T
Q  330 aaggagacaatatt 343  Q
    |||||| |||||||    
T  9442979 aaggagtcaatatt 9442966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 48361757 - 48362100
Alignment:
Q  1 ttacatttgtgactggatcttgttctctgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatact 100  Q
    |||||||||||||| || |||    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  48361757 ttacatttgtgactcgacctttgcatctgatgtttcaatgtgggttatgaatgaatatggtattgaagaatcatagactaaggtttacaacatcaatact 48361856  T
Q  101 tcgttcaatccatctggcgatcgtacttcatggactacaaatttatgtttgcctataaaacactttgaagaaggtgctgccatattgttacatcattccc 200  Q
     |||||||||| ||  ||  |  | |||| |||  | ||  ||||||   ||| |||||||||||||||||||||||||||||||||||| ||||||||     
T  48361857 gcgttcaatccttcgagcagttttgcttcttggcattcagctttatg---gccgataaaacactttgaagaaggtgctgccatattgttatatcattcct 48361953  T
Q  201 aaaattgtttgatgtactatgaacctgaaaaatatgaattcaaacttttccgaatacatgggagtcgttcaatgttttttgaagtaatcccacatattcc 300  Q
    |  |  |||| || || ||||||||||| ||||||  || ||||  ||| |  || || ||||||||||||   | ||||||||||||||||||||||||    
T  48361954 acgaccgtttaatctattatgaacctgagaaatatagatgcaaagcttttcatattcacgggagtcgttcaggttcttttgaagtaatcccacatattcc 48362053  T
Q  301 aag-----tttaatttcattgaaggatgtcttgaaaggagacaatat 342  Q
    |||     ||||||||||||||||||||||||||||||||| |||||    
T  48362054 aagtctaatttaatttcattgaaggatgtcttgaaaggagataatat 48362100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 28 - 343
Target Start/End: Complemental strand, 35780002 - 35779696
Alignment:
Q  28 tgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatacttcgttcaatccatct-ggcgatcgtac 126  Q
    ||||||| |||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||  | |||||| ||||| | ||| ||| ||| ||     
T  35780002 tgatgttacaatgtgggttatgaatgagcatggcattgaagaatcgtggactaaggtttacaacattgagacttcggtcaattc-tctaggctatcctat 35779904  T
Q  127 ttcatggactacaaatttatgtttgcctataaaacactttgaagaaggtgctgccatattgttacatcattcccaaaattgtttgatgtactatgaacct 226  Q
    ||||  |  |     |||||||| |||  |||||| ||||||         ||||||||||||| |||||||    |||||||| || |||| |||||||    
T  35779903 ttcaccgcgttatggtttatgttggccggtaaaaccctttga---------tgccatattgttatatcattcatgcaattgttttatctactttgaacct 35779813  T
Q  227 gaaaaatatgaattcaaacttttccgaatacatgggagtcgttcaatgttttttgaagtaatcccacatattccaagtttaatttcattgaaggatgtct 326  Q
    || ||||||| || |||| |||| ||||| | ||||| ||||||||  | | |||||||||| ||||||||||||||| |||| ||||||||||||||      
T  35779812 gagaaatatggatacaaagtttttcgaattcgtgggactcgttcaaaatctgttgaagtaattccacatattccaagtctaatatcattgaaggatgttg 35779713  T
Q  327 tgaaaggagacaatatt 343  Q
    | |||||||||||||||    
T  35779712 taaaaggagacaatatt 35779696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 26324200 - 26324285
Alignment:
Q  26 tctgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatacttcgttcaatcc 111  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||| || |||||||||||||    
T  26324200 tctgatgtttcaatgtgggttatgaatgaatatggcactggagaatcatggactaagatttacaacatcgatgcttcgttcaatcc 26324285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 343
Target Start/End: Complemental strand, 5130853 - 5130665
Alignment:
Q  156 taaaacactttgaagaaggtgctgccatattgttacatcattcccaaaattgtttgatgt-actatgaacctgaaaaatatgaattcaaacttttccgaa 254  Q
    |||||||||||||||| ||||||||||||||| || ||||||||   || |||||  | | || ||||||| || ||||||  || |||| |||| ||||    
T  5130853 taaaacactttgaagagggtgctgccatattgctatatcattcctgcaactgttttgtcttaccatgaaccggagaaatatagatacaaagtttttcgaa 5130754  T
Q  255 tacatgggagtcgttcaatgttttttgaagtaatcccacatattccaagtttaatttcattgaaggatgtcttgaaaggagacaatatt 343  Q
    | ||||||| | ||||||      |||||||||| ||||||||| ||||| |||||||| | |||||| |  |||||||||||||||||    
T  5130753 ttcatgggacttgttcaaaaaagattgaagtaattccacatatttcaagtctaatttcactaaaggatattgtgaaaggagacaatatt 5130665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 4819 - 4738
Alignment:
Q  30 atgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatacttcgttcaatcc 111  Q
    ||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||| ||||||| || ||||||    
T  4819 atgttacaatgtgggttatgaatgaatatggcattggtgaatcatggactaaggtttaccacattaatactttgtacaatcc 4738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 277 - 343
Target Start/End: Complemental strand, 4585 - 4519
Alignment:
Q  277 ttttgaagtaatcccacatattccaagtttaatttcattgaaggatgtcttgaaaggagacaatatt 343  Q
    |||||||||||| ||||||||||||||| |||| ||||||||||||| | |||||||||||||||||    
T  4585 ttttgaagtaattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagacaatatt 4519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 4705 - 4663
Alignment:
Q  156 taaaacactttgaagaaggtgctgccatattgttacatcattc 198  Q
    |||||||||||||||| ||||||||  ||||||||||||||||    
T  4705 taaaacactttgaagagggtgctgctgtattgttacatcattc 4663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 16716518 - 16716455
Alignment:
Q  30 atgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacat 93  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  16716518 atgttacaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttaccacat 16716455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 275 - 343
Target Start/End: Complemental strand, 16716274 - 16716206
Alignment:
Q  275 ttttttgaagtaatcccacatattccaagtttaatttcattgaaggatgtcttgaaaggagacaatatt 343  Q
    |||||| ||||||| ||||||||||||||| |||| ||||||||||||| | |||||||||| ||||||    
T  16716274 ttttttaaagtaattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagagaatatt 16716206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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