View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20072_low_26 (Length: 357)
Name: NF20072_low_26
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20072_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 343
Target Start/End: Complemental strand, 29825677 - 29825355
Alignment:
| Q |
13 |
ataatactcaatccaaaagtttgtagttagttaataatccataatatttaataaatgttagttgcaaactgttaagctttggttaagcttctgttatttg |
112 |
Q |
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| T |
29825677 |
ataatactcaatccaaaagtttgtagttagttaataatccataatatttaataaatgttagttgcaaactgttaagctttggttaagcttctgttatttg |
29825578 |
T |
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| Q |
113 |
attagctctagttatttaaccaacaagttacttgcatataaatatataagttttaaactgtcattttaaacaaccaattaaatatagttacaacaaactc |
212 |
Q |
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| T |
29825577 |
attagctctagttatttaaccaacaagttacttgcatataa----ataagttttaaactgtcattttaaacaatcaattaaatatagttacaacaaactc |
29825482 |
T |
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| Q |
213 |
ttcttctctctttatcttcatcgatcatcatcctctaatctcattatttctccttagatttcattcattctagttgattgcttgcaaaacaagaaactct |
312 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29825481 |
ttcttctctctttatcttc----atcatcatcctctaatctcattctttctccttagatttcattcattctagttgattgcttgcaaaacaagaaactct |
29825386 |
T |
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| Q |
313 |
tgctgcactaacgaaattgagcctaattatt |
343 |
Q |
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| T |
29825385 |
tgctgcactaacgaaattgagcctaattatt |
29825355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 215
Target Start/End: Original strand, 29825978 - 29826012
Alignment:
| Q |
181 |
aacaaccaattaaatatagttacaacaaactcttc |
215 |
Q |
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| T |
29825978 |
aacaatcaattaaatatagttacaacaaactcttc |
29826012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 296
Target Start/End: Complemental strand, 538719 - 538559
Alignment:
| Q |
131 |
accaacaagttacttgcatataaatatataagttttaaactgtcattttaaacaaccaattaaatatagttacaacaaactcttcttctctctttatctt |
230 |
Q |
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|||||||||||||||| || || ||| ||||||| |||||| | |||| | ||| |||| |||||||||||||||||||| ||||||| |||| ||||| |
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| T |
538719 |
accaacaagttacttgtatgtatataaataagttgtaaactctgatttgcatcaatcaatgaaatatagttacaacaaact-ttcttctatcttgatctt |
538621 |
T |
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| Q |
231 |
catcgatcatcatcctctaatctcattatttctccttagatttcattcattctagttgattgcttg |
296 |
Q |
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| T |
538620 |
c----atcatcatcatctaatctcactctttctctttagttttcattcatcataggtgattgcttg |
538559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 538793 - 538742
Alignment:
| Q |
47 |
taatccataatatttaataaatgttagttgcaaa-ctgttaagctttggtta |
97 |
Q |
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|||||||||||| | |||||||||||||| |||| ||||||||||||||||| |
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| T |
538793 |
taatccataatagtgaataaatgttagttacaaagctgttaagctttggtta |
538742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 296
Target Start/End: Original strand, 9238932 - 9238992
Alignment:
| Q |
236 |
atcatcatcctctaatctcattatttctccttagatttcattcattctagttgattgcttg |
296 |
Q |
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|||||||| ||||||| |||| |||| || ||| |||||||||||||| ||||||||||| |
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| T |
9238932 |
atcatcattctctaatttcatcttttccccatagttttcattcattctatttgattgcttg |
9238992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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