View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20072_low_37 (Length: 311)

Name: NF20072_low_37
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20072_low_37
NF20072_low_37
[»] chr8 (3 HSPs)
chr8 (238-311)||(42094720-42094793)
chr8 (238-311)||(42094008-42094081)
chr8 (237-281)||(44656323-44656367)
[»] chr5 (2 HSPs)
chr5 (234-311)||(33087442-33087519)
chr5 (238-311)||(33086728-33086801)
[»] chr3 (6 HSPs)
chr3 (239-311)||(47571915-47571987)
chr3 (239-311)||(47571196-47571268)
chr3 (237-283)||(47808360-47808406)
chr3 (238-286)||(53344742-53344790)
chr3 (239-288)||(49349676-49349725)
chr3 (11-39)||(19274791-19274819)
[»] chr2 (3 HSPs)
chr2 (239-311)||(44986812-44986884)
chr2 (11-39)||(3147508-3147536)
chr2 (239-311)||(44987515-44987587)
[»] chr7 (3 HSPs)
chr7 (10-61)||(46672566-46672617)
chr7 (10-39)||(31226881-31226910)
chr7 (10-39)||(35647476-35647505)
[»] scaffold0002 (1 HSPs)
scaffold0002 (236-277)||(97201-97242)
[»] chr6 (2 HSPs)
chr6 (10-39)||(20645718-20645747)
chr6 (239-283)||(2741403-2741447)
[»] chr4 (1 HSPs)
chr4 (237-278)||(34450813-34450854)
[»] chr1 (3 HSPs)
chr1 (235-296)||(26240862-26240923)
chr1 (237-289)||(26240112-26240164)
chr1 (11-39)||(33076665-33076693)


Alignment Details
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 42094793 - 42094720
Alignment:
Q  238 aggtgaattctaaggtgaaggatcaatcaagtccctcaccgatgaagcatgaagaaaattcaattggatttaat 311  Q
    |||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| | || |||||||||||    
T  42094793 aggtgaattctagggtgagggatcaattaagtccctcaccgatgaagcatgaagaaattacagttggatttaat 42094720  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 311
Target Start/End: Original strand, 42094008 - 42094081
Alignment:
Q  238 aggtgaattctaaggtgaaggatcaatcaagtccctcaccgatgaagcatgaagaaaattcaattggatttaat 311  Q
    ||||| |||||| ||||| |||||||| ||||||||||||| ||||||||||||||| | || ||| |||||||    
T  42094008 aggtggattctagggtgagggatcaattaagtccctcaccggtgaagcatgaagaaattacagttgaatttaat 42094081  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 44656367 - 44656323
Alignment:
Q  237 taggtgaattctaaggtgaaggatcaatcaagtccctcaccgatg 281  Q
    |||||| |||||||||||| ||| |||| ||||||||||||||||    
T  44656367 taggtggattctaaggtgagggagcaattaagtccctcaccgatg 44656323  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 311
Target Start/End: Complemental strand, 33087519 - 33087442
Alignment:
Q  234 tattaggtgaattctaaggtgaaggatcaatcaagtccctcaccgatgaagcatgaagaaaattcaattggatttaat 311  Q
    |||| ||||||||||| | ||| |||||||||||||||||||||| ||||||||||||||| | || |||||||||||    
T  33087519 tatttggtgaattctaggatgagggatcaatcaagtccctcaccggtgaagcatgaagaaattacagttggatttaat 33087442  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 311
Target Start/End: Original strand, 33086728 - 33086801
Alignment:
Q  238 aggtgaattctaaggtgaaggatcaatcaagtccctcaccgatgaagcatgaagaaaattcaattggatttaat 311  Q
    ||||| |||||| | ||| |||||||| |||||| |||||| ||||||||||||||| | || ||| |||||||    
T  33086728 aggtggattctaggatgagggatcaattaagtccttcaccggtgaagcatgaagaaattacagttgaatttaat 33086801  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 311
Target Start/End: Complemental strand, 47571987 - 47571915
Alignment:
Q  239 ggtgaattctaaggtgaaggatcaatcaagtccctcaccgatgaagcatgaagaaaattcaattggatttaat 311  Q
    ||||||||||| ||||| |||||||| ||||||||||||| |||| |||||||||| | || |||||||||||    
T  47571987 ggtgaattctagggtgagggatcaattaagtccctcaccggtgaaacatgaagaaattacagttggatttaat 47571915  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 311
Target Start/End: Original strand, 47571196 - 47571268
Alignment:
Q  239 ggtgaattctaaggtgaaggatcaatcaagtccctcaccgatgaagcatgaagaaaattcaattggatttaat 311  Q
    |||| |||||| ||||| |||||||| ||||||||||||| ||||||||||||||| | || ||| |||||||    
T  47571196 ggtggattctagggtgagggatcaattaagtccctcaccggtgaagcatgaagaaattacagttgaatttaat 47571268  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 47808360 - 47808406
Alignment:
Q  237 taggtgaattctaaggtgaaggatcaatcaagtccctcaccgatgaa 283  Q
    |||||| |||||| ||||| |||||||||||||||||||||||||||    
T  47808360 taggtggattctagggtgagggatcaatcaagtccctcaccgatgaa 47808406  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 53344790 - 53344742
Alignment:
Q  238 aggtgaattctaaggtgaaggatcaatcaagtccctcaccgatgaagca 286  Q
    ||||| |||||| ||||| |||||||||||||||||||||| |||||||    
T  53344790 aggtggattctagggtgagggatcaatcaagtccctcaccggtgaagca 53344742  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 49349676 - 49349725
Alignment:
Q  239 ggtgaattctaaggtgaaggatcaatcaagtccctcaccgatgaagcatg 288  Q
    |||| |||||| ||||| |||||||| ||||||||||||| |||||||||    
T  49349676 ggtggattctagggtgagggatcaattaagtccctcaccggtgaagcatg 49349725  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 19274791 - 19274819
Alignment:
Q  11 gatgaaaatgtgacgtgtttggtaacaag 39  Q
    |||||||||||||||||||||||||||||    
T  19274791 gatgaaaatgtgacgtgtttggtaacaag 19274819  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 311
Target Start/End: Original strand, 44986812 - 44986884
Alignment:
Q  239 ggtgaattctaaggtgaaggatcaatcaagtccctcaccgatgaagcatgaagaaaattcaattggatttaat 311  Q
    ||||||||||| ||||| |||||||| |||||||||| || ||||||||||| ||| | || ||| |||||||    
T  44986812 ggtgaattctagggtgagggatcaattaagtccctcatcggtgaagcatgaataaattacagttgaatttaat 44986884  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 3147508 - 3147536
Alignment:
Q  11 gatgaaaatgtgacgtgtttggtaacaag 39  Q
    |||||||||||||||||||||||||||||    
T  3147508 gatgaaaatgtgacgtgtttggtaacaag 3147536  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 311
Target Start/End: Complemental strand, 44987587 - 44987515
Alignment:
Q  239 ggtgaattctaaggtgaaggatcaatcaagtccctcaccgatgaagcatgaagaaaattcaattggatttaat 311  Q
    |||| |||||| ||||| |||||||| ||||| ||||| | ||||||||||||||| | || ||| |||||||    
T  44987587 ggtggattctagggtgagggatcaattaagtctctcactggtgaagcatgaagaaattacagttgaatttaat 44987515  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 46672566 - 46672617
Alignment:
Q  10 agatgaaaatgtgacgtgtttggtaacaagnnnnnnncatgagcttatagcg 61  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||    
T  46672566 agatgaaaatgtgacgtgtttggtaacaagcttttttcatgagcttatagcg 46672617  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 31226910 - 31226881
Alignment:
Q  10 agatgaaaatgtgacgtgtttggtaacaag 39  Q
    ||||||||||||||||||||||||||||||    
T  31226910 agatgaaaatgtgacgtgtttggtaacaag 31226881  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 35647476 - 35647505
Alignment:
Q  10 agatgaaaatgtgacgtgtttggtaacaag 39  Q
    ||||||||||||||||||||||||||||||    
T  35647476 agatgaaaatgtgacgtgtttggtaacaag 35647505  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 97201 - 97242
Alignment:
Q  236 ttaggtgaattctaaggtgaaggatcaatcaagtccctcacc 277  Q
    |||| ||||||||||||||| || ||||||||||||||||||    
T  97201 ttagttgaattctaaggtgatggttcaatcaagtccctcacc 97242  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 20645718 - 20645747
Alignment:
Q  10 agatgaaaatgtgacgtgtttggtaacaag 39  Q
    ||||||||||||||||||||||||||||||    
T  20645718 agatgaaaatgtgacgtgtttggtaacaag 20645747  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 2741447 - 2741403
Alignment:
Q  239 ggtgaattctaaggtgaaggatcaatcaagtccctcaccgatgaa 283  Q
    ||||||||||||||||| || | ||||||||||||||||| ||||    
T  2741447 ggtgaattctaaggtgatggtttaatcaagtccctcaccggtgaa 2741403  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 34450813 - 34450854
Alignment:
Q  237 taggtgaattctaaggtgaaggatcaatcaagtccctcaccg 278  Q
    ||||||||||||| ||||| |||||||| |||||||||||||    
T  34450813 taggtgaattctagggtgagggatcaattaagtccctcaccg 34450854  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 26240923 - 26240862
Alignment:
Q  235 attaggtgaattctaaggtgaaggatcaatcaagtccctcaccgatgaagcatgaagaaaat 296  Q
    |||||||| |||||| ||||| || ||||| ||||||||||||| || | ||||||||||||    
T  26240923 attaggtggattctagggtgagggttcaattaagtccctcaccggtggaccatgaagaaaat 26240862  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 26240112 - 26240164
Alignment:
Q  237 taggtgaattctaaggtgaaggatcaatcaagtccctcaccgatgaagcatga 289  Q
    |||||| |||||| ||||| |||||||| ||||||||||||| |||| |||||    
T  26240112 taggtggattctagggtgagggatcaattaagtccctcaccggtgaaccatga 26240164  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 33076665 - 33076693
Alignment:
Q  11 gatgaaaatgtgacgtgtttggtaacaag 39  Q
    |||||||||||||||||||||||||||||    
T  33076665 gatgaaaatgtgacgtgtttggtaacaag 33076693  T

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