View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20072_low_38 (Length: 295)

Name: NF20072_low_38
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20072_low_38
NF20072_low_38
[»] chr1 (1 HSPs)
chr1 (13-295)||(7432504-7432784)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 295
Target Start/End: Original strand, 7432504 - 7432784
Alignment:
Q  13 aatattagggttagtagagattgtatttcgtggcgaccggcgactgaagtgtcaatccaattgagatatatattttttcatcttggatcctcctctgttg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||  |||||||||||||||||||||||||||||    
T  7432504 aatattagggttagtagagattgtatttcgtggcgaccggcgacagaagtgtcaatccagttgagatat--attttttcatcttggatcctcctctgttg 7432601  T
Q  113 cataaagaaaatcaattcaacctagttcaataaatagtacaattcttaaattaatttaataagaatatttaggttatcataattggtcgatcactatata 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7432602 cataaagaaaatcaattcaacctagttcaataaatagtacaattcttaaattaatttaataaaaatatttaggttatcataattggtcgatcactatata 7432701  T
Q  213 ctagcatgcaattcacctttcatataggtgtagaatgtaaaatgtagatttatgtcgacaagaaatgaaatttgacatggttt 295  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7432702 ctagcatgcaattcacttttcatataggtgtagaatgtaaaatgtagatttatgtcgacaagaaatgaaatttgacatggttt 7432784  T

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